[←][→] ath   AT5G65770 Gene
functional annotation
Function   branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);little nuclei4  
GO BP
GO:0097298 [list] [network] regulation of nucleus size  (3 genes)  IMP  
GO:0006997 [list] [network] nucleus organization  (58 genes)  IMP  
GO:0006974 [list] [network] cellular response to DNA damage stimulus  (329 genes)  IGI  
GO CC
GO:0005652 [list] [network] nuclear lamina  (4 genes)  IDA  
GO:0010369 [list] [network] chromocenter  (10 genes)  IMP  
GO:0034399 [list] [network] nuclear periphery  (19 genes)  IDA  
GO:0031965 [list] [network] nuclear membrane  (42 genes)  IEA  
GO:0005654 [list] [network] nucleoplasm  (444 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath00270 [list] [network] Cysteine and methionine metabolism (121 genes)
ath00280 [list] [network] Valine, leucine and isoleucine degradation (51 genes)
ath00290 [list] [network] Valine, leucine and isoleucine biosynthesis (22 genes)
ath00770 [list] [network] Pantothenate and CoA biosynthesis (28 genes)
ath01210 [list] [network] 2-Oxocarboxylic acid metabolism (74 genes)
ath01230 [list] [network] Biosynthesis of amino acids (251 genes)
Protein NP_001154799.1  NP_001190626.1  NP_001190627.1  NP_201378.5 
BLAST NP_001154799.1  NP_001190626.1  NP_001190627.1  NP_201378.5 
Orthologous [Ortholog page] LOC4325497 (osa)  LOC7485207 (ppo)  LOC25493541 (mtr)  LOC100216960 (zma)  LOC100245758 (vvi)  LOC100783880 (gma)  LOC100804453 (gma)  LOC101246104 (sly)  LOC103837593 (bra)  LOC103874016 (bra) 
Subcellular
localization
wolf
chlo 7,  nucl 2  (predict for NP_001154799.1)
chlo 7,  nucl 2  (predict for NP_001190626.1)
chlo 7,  nucl 2  (predict for NP_001190627.1)
chlo 7,  nucl 2  (predict for NP_201378.5)
Subcellular
localization
TargetP
chlo 5  (predict for NP_001154799.1)
chlo 5  (predict for NP_001190626.1)
chlo 5  (predict for NP_001190627.1)
chlo 5  (predict for NP_201378.5)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with LINC4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.8 AT4G31880 transcriptional regulator [detail] 829318
11.4 AT5G46070 Guanylate-binding family protein [detail] 834648
11.0 AT5G55660 DEK domain-containing chromatin associated protein [detail] 835660
11.0 AT2G39260 regulator of nonsense transcripts UPF2 [detail] 818511
10.6 LINC3 little nuclei3 [detail] 843210
8.9 LINC1 little nuclei1 [detail] 843043
7.9 AT3G23900 RNA recognition motif (RRM)-containing protein [detail] 821973
7.4 AT3G18640 Zinc finger C-x8-C-x5-C-x3-H type family protein [detail] 821395
7.3 AT2G34730 myosin heavy chain-like protein [detail] 818038
7.3 SMC5 structural maintenance of chromosomes 5 [detail] 831449
6.4 IBM1 Transcription factor jumonji (jmjC) domain-containing protein [detail] 819952
6.2 AT5G55040 DNA-binding bromodomain-containing protein [detail] 835595
Coexpressed
gene list		 [Coexpressed gene list for LINC4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247157_at
247157_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247157_at
247157_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247157_at
247157_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836706      
Refseq ID (protein) NP_001154799.1 
NP_001190626.1 
NP_001190627.1 
NP_201378.5 


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