[←][→] ath   At5g67240 Gene
functional annotation
Function   small RNA degrading nuclease 3    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0016592 [list] [network] mediator complex  (43 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (96 genes)
Protein NP_001318895.1  NP_001331563.1  NP_001331564.1  NP_201525.2 
BLAST NP_001318895.1  NP_001331563.1  NP_001331564.1  NP_201525.2 
Orthologous [Ortholog page] AT3G50090 (ath)  SDN1 (ath)  SDN2 (ath)  LOC4337228 (osa)  LOC7483093 (ppo)  LOC25485770 (mtr)  LOC100785565 (gma)  LOC101248438 (sly)  LOC103827874 (bra)  LOC103829525 (bra)  LOC103829878 (bra)  LOC103840928 (bra)  LOC112998160 (gma)  LOC123047099 (tae)  LOC123050356 (tae)  LOC123050358 (tae)  LOC123190761 (tae)  LOC123428130 (hvu) 
Subcellular
localization
wolf
cyto 9,  chlo 1,  plas 1  (predict for NP_001318895.1)
cyto 5,  nucl 3,  cyto_plas 3  (predict for NP_001331563.1)
cyto 6,  chlo 1,  nucl 1  (predict for NP_001331564.1)
cyto 4,  nucl 4,  chlo 1  (predict for NP_201525.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001318895.1)
other 9  (predict for NP_001331563.1)
other 9  (predict for NP_001331564.1)
other 9  (predict for NP_201525.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
ath03018 RNA degradation 2
Genes directly connected with SDN3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
12.5 AT1G13160 ARM repeat superfamily protein [detail] 837874
12.2 AT2G40430 Nop53 protein [detail] 818636
11.9 AT3G01160 pre-rRNA-processing ESF1-like protein [detail] 820504
11.3 AT5G17930 MIF4G domain-containing protein / MA3 domain-containing protein [detail] 831661
11.2 AT1G23280 MAK16 protein-like protein [detail] 838937
10.9 AtNug2 GTP-binding family protein [detail] 841731
10.7 AT5G50310 Galactose oxidase/kelch repeat superfamily protein [detail] 835096
9.6 AT4G19610 nucleotide/nucleic acid binding protein [detail] 827703
9.5 AT3G02760 Class II aaRS and biotin synthetases superfamily protein [detail] 820930
9.4 AT3G49990 Low temperature viability protein [detail] 824161
9.1 MTR4 RNA helicase, ATP-dependent, SK12/DOB1 protein [detail] 842269
9.0 XRN2 exoribonuclease 2 [detail] 834261
9.0 AT1G12650 rRNA biogenesis RRP36-like protein [detail] 837821
8.9 AT3G51270 protein serine/threonine kinase [detail] 824290
8.3 AT5G27990 Pre-rRNA-processing protein TSR2, conserved region [detail] 832869
6.7 TFIIIA transcription factor IIIA [detail] 843536
Coexpressed
gene list		 [Coexpressed gene list for SDN3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247032_at
247032_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247032_at
247032_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247032_at
247032_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836859      
Refseq ID (protein) NP_001318895.1 
NP_001331563.1 
NP_001331564.1 
NP_201525.2 


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