[←][→] ath   AT5G05540 Gene
functional annotation
Function   small RNA degrading nuclease 2  
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0004527 [list] [network] exonuclease activity  (97 genes)  IBA  
GO:0003676 [list] [network] nucleic acid binding  (4187 genes)  IEA  
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
Protein NP_001119175.1  NP_196173.1 
BLAST NP_001119175.1  NP_196173.1 
Orthologous [Ortholog page] AT3G50090 (ath)  SDN1 (ath)  SDN3 (ath)  LOC4337228 (osa)  LOC7483093 (ppo)  LOC25482186 (mtr)  LOC25485770 (mtr)  LOC100254172 (vvi)  LOC100785565 (gma)  LOC101248438 (sly)  LOC103645842 (zma)  LOC103827874 (bra)  LOC103829525 (bra)  LOC103829878 (bra)  LOC103840928 (bra)  LOC112998160 (gma) 
Subcellular
localization
wolf
cyto 4,  nucl 1,  pero 1,  chlo 1,  mito 1,  plas 1,  cysk 1,  chlo_mito 1,  cysk_plas 1,  mito_plas 1  (predict for NP_001119175.1)
cyto 4,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_196173.1)
Subcellular
localization
TargetP
other 7,  scret 4  (predict for NP_001119175.1)
other 7,  scret 4  (predict for NP_196173.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
Genes directly connected with SDN2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.0 PRORP2 proteinaceous RNase P 2 [detail] 816166
6.1 AT1G30590 RNA polymerase I specific transcription initiation factor RRN3 protein [detail] 839939
6.1 AT3G51270 protein serine/threonine kinase [detail] 824290
6.0 LOH1 RNA-binding CRS1 / YhbY (CRM) domain protein [detail] 822128
6.0 AT1G16650 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 838234
5.5 AT1G55930 CBS domain-containing protein / transporter associated domain-containing protein [detail] 842044
5.0 AT2G32170 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 817776
Coexpressed
gene list		 [Coexpressed gene list for SDN2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250786_at
250786_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250786_at
250786_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250786_at
250786_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830437      
Refseq ID (protein) NP_001119175.1 
NP_196173.1 


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