[←][→] ath   AT5G67240 Gene
functional annotation
Function   small RNA degrading nuclease 3  
GO BP
GO CC
GO:0016592 [list] [network] mediator complex  (43 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
Protein NP_001318895.1  NP_001331563.1  NP_001331564.1  NP_201525.2 
BLAST NP_001318895.1  NP_001331563.1  NP_001331564.1  NP_201525.2 
Orthologous [Ortholog page] AT3G50090 (ath)  SDN1 (ath)  SDN2 (ath)  LOC4337228 (osa)  LOC7483093 (ppo)  LOC25482186 (mtr)  LOC25485770 (mtr)  LOC100254172 (vvi)  LOC100785565 (gma)  LOC101248438 (sly)  LOC103645842 (zma)  LOC103827874 (bra)  LOC103829525 (bra)  LOC103829878 (bra)  LOC103840928 (bra)  LOC112998160 (gma) 
Subcellular
localization
wolf
cyto 9,  chlo 1,  plas 1  (predict for NP_001318895.1)
cyto 5,  nucl 3,  cyto_plas 3  (predict for NP_001331563.1)
cyto 6,  chlo 1,  nucl 1  (predict for NP_001331564.1)
cyto 4,  nucl 4,  chlo 1  (predict for NP_201525.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001318895.1)
other 9  (predict for NP_001331563.1)
other 9  (predict for NP_001331564.1)
other 9  (predict for NP_201525.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
Genes directly connected with SDN3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.1 AT2G40430 Nop53 protein [detail] 818636
10.7 AT5G17930 MIF4G domain-containing protein / MA3 domain-containing protein [detail] 831661
10.5 AT3G01160 pre-rRNA-processing ESF1-like protein [detail] 820504
10.1 AT5G06110 DnaJ and myb-like DNA-binding domain-containing protein [detail] 830498
9.8 AT4G19610 nucleotide/nucleic acid binding protein [detail] 827703
8.9 XRN2 exoribonuclease 2 [detail] 834261
8.7 AT3G43590 zinc knuckle (CCHC-type) family protein [detail] 823456
7.6 AT3G62310 RNA helicase family protein [detail] 825404
7.2 ROS3 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 835925
Coexpressed
gene list		 [Coexpressed gene list for SDN3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247032_at
247032_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247032_at
247032_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247032_at
247032_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 836859      
Refseq ID (protein) NP_001318895.1 
NP_001331563.1 
NP_001331564.1 
NP_201525.2 


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