[←][→] vvi   VIT_00000228001 Gene
functional annotation
Function   small RNA degrading nuclease 1  
GO BP
GO CC
GO MF
KEGG vvi03008 [list] [network] Ribosome biogenesis in eukaryotes (87 genes)
Protein XP_010652773.1 
BLAST XP_010652773.1 
Orthologous [Ortholog page] AT3G50090 (ath)  SDN1 (ath)  SDN2 (ath)  SDN3 (ath)  LOC4337228 (osa)  LOC7483093 (ppo)  LOC25482186 (mtr)  LOC25485770 (mtr)  LOC100785565 (gma)  LOC101248438 (sly)  LOC103645842 (zma)  LOC103827874 (bra)  LOC103829525 (bra)  LOC103829878 (bra)  LOC103840928 (bra)  LOC112998160 (gma) 
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_010652773.1)
Subcellular
localization
TargetP
other 8  (predict for XP_010652773.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
Genes directly connected with LOC100254172 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.9 LOC100262769 nucleolin 2 [detail] 100262769
8.1 LOC100265196 probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [detail] 100265196
8.1 LOC100246891 nuclear/nucleolar GTPase 2 [detail] 100246891
7.1 LOC100264670 suppressor of mec-8 and unc-52 protein homolog 2 [detail] 100264670
6.3 LOC100267878 nucleosome assembly protein 1;4 [detail] 100267878
5.6 LOC100256263 bystin [detail] 100256263
5.6 LOC100260844 uncharacterized LOC100260844 [detail] 100260844
5.6 LOC100854736 cysteine--tRNA ligase 2, cytoplasmic-like [detail] 100854736
5.0 LOC100245032 sulfite reductase 1 [ferredoxin], chloroplastic [detail] 100245032
4.8 LOC100242087 putative tRNA pseudouridine synthase Pus10 [detail] 100242087
4.5 LOC100255896 programmed cell death protein 2-like [detail] 100255896
Coexpressed
gene list		 [Coexpressed gene list for LOC100254172]
Gene expression
All samples [Expression pattern for all samples]
Link to other DBs
Entrez Gene ID 100254172      
Refseq ID (protein) XP_010652773.1 


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