[←][→] ath   AT3G09600 Gene
functional annotation
Function   Homeodomain-like superfamily protein  
GO BP
GO:0032922 [list] [network] circadian regulation of gene expression  (7 genes)  IMP  
GO:0042753 [list] [network] positive regulation of circadian rhythm  (12 genes)  IMP  
GO:0043966 [list] [network] histone H3 acetylation  (18 genes)  IMP  
GO:0042752 [list] [network] regulation of circadian rhythm  (57 genes)  IGI  
GO:0048573 [list] [network] photoperiodism, flowering  (67 genes)  IMP  
GO:0009739 [list] [network] response to gibberellin  (154 genes)  IEP  
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (206 genes)  IMP  
GO:0009751 [list] [network] response to salicylic acid  (215 genes)  IEP  
GO:0009753 [list] [network] response to jasmonic acid  (222 genes)  IEP  
GO:0009723 [list] [network] response to ethylene  (297 genes)  IEP  
GO:0046686 [list] [network] response to cadmium ion  (346 genes)  IEP  
GO:0009733 [list] [network] response to auxin  (407 genes)  IEP  
GO:0009651 [list] [network] response to salt stress  (485 genes)  IEP  
GO:0010628 [list] [network] positive regulation of gene expression  (561 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (574 genes)  IEP  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (796 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  ISS  
KEGG
Protein NP_001030662.1  NP_001327345.1  NP_001327346.1  NP_001327347.1  NP_001327348.1  NP_001327349.1  NP_001327350.1  NP_001327351.1  NP_187571.2 
BLAST NP_001030662.1  NP_001327345.1  NP_001327346.1  NP_001327347.1  NP_001327348.1  NP_001327349.1  NP_001327350.1  NP_001327351.1  NP_187571.2 
Orthologous [Ortholog page] MYB118 (gma)  LCL1 (ath)  LOC7467599 (ppo)  LOC25484055 (mtr)  LOC100249962 (vvi)  LOC100783482 (gma)  LOC100797466 (gma)  LOC100807156 (gma)  LOC101253545 (sly)  LOC103847419 (bra)  LOC103848060 (bra)  LOC103855503 (bra)  LOC103870531 (bra) 
Subcellular
localization
wolf
nucl 9,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_001030662.1)
nucl 8,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001327345.1)
nucl 9,  chlo 1,  plas 1  (predict for NP_001327346.1)
nucl 9,  chlo 1,  plas 1  (predict for NP_001327347.1)
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001327348.1)
nucl 9,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_001327349.1)
nucl 8,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001327350.1)
nucl 8,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_001327351.1)
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_187571.2)
Subcellular
localization
TargetP
chlo 7,  other 3  (predict for NP_001030662.1)
other 7  (predict for NP_001327345.1)
other 7  (predict for NP_001327346.1)
other 7  (predict for NP_001327347.1)
chlo 7,  other 3  (predict for NP_001327348.1)
chlo 7,  other 3  (predict for NP_001327349.1)
other 7  (predict for NP_001327350.1)
chlo 7,  other 3  (predict for NP_001327351.1)
chlo 7,  other 3  (predict for NP_187571.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
Genes directly connected with RVE8 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
16.3 LHY Homeodomain-like superfamily protein [detail] 839341
13.4 CCA1 circadian clock associated 1 [detail] 819296
10.6 BBX19 B-box type zinc finger family protein [detail] 830051
5.5 AT1G70250 receptor serine/threonine kinase [detail] 843361
4.7 AT5G62130 Per1-like family protein [detail] 836333
Coexpressed
gene list		 [Coexpressed gene list for RVE8]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258724_at
258724_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258724_at
258724_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258724_at
258724_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820117      
Refseq ID (protein) NP_001030662.1 
NP_001327345.1 
NP_001327346.1 
NP_001327347.1 
NP_001327348.1 
NP_001327349.1 
NP_001327350.1 
NP_001327351.1 
NP_187571.2 


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