functional annotation |
Function |
Homeodomain-like superfamily protein |
|
GO BP |
GO:0032922 [list] [network] circadian regulation of gene expression
|
(7 genes)
|
IMP
|
|
GO:0042753 [list] [network] positive regulation of circadian rhythm
|
(12 genes)
|
IMP
|
|
GO:0043966 [list] [network] histone H3 acetylation
|
(18 genes)
|
IMP
|
|
GO:0042752 [list] [network] regulation of circadian rhythm
|
(57 genes)
|
IGI
|
|
GO:0048573 [list] [network] photoperiodism, flowering
|
(67 genes)
|
IMP
|
|
GO:0009739 [list] [network] response to gibberellin
|
(154 genes)
|
IEP
|
|
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II
|
(206 genes)
|
IMP
|
|
GO:0009751 [list] [network] response to salicylic acid
|
(215 genes)
|
IEP
|
|
GO:0009753 [list] [network] response to jasmonic acid
|
(222 genes)
|
IEP
|
|
GO:0009723 [list] [network] response to ethylene
|
(297 genes)
|
IEP
|
|
GO:0046686 [list] [network] response to cadmium ion
|
(346 genes)
|
IEP
|
|
GO:0009733 [list] [network] response to auxin
|
(407 genes)
|
IEP
|
|
GO:0009651 [list] [network] response to salt stress
|
(485 genes)
|
IEP
|
|
GO:0010628 [list] [network] positive regulation of gene expression
|
(561 genes)
|
IMP
|
|
GO:0009737 [list] [network] response to abscisic acid
|
(574 genes)
|
IEP
|
|
GO:0006355 [list] [network] regulation of transcription, DNA-templated
|
(1984 genes)
|
TAS
|
|
|
GO CC |
GO:0005634 [list] [network] nucleus
|
(10793 genes)
|
IEA
ISM
|
|
|
GO MF |
GO:0043565 [list] [network] sequence-specific DNA binding
|
(796 genes)
|
IDA
|
|
GO:0003700 [list] [network] DNA-binding transcription factor activity
|
(1599 genes)
|
ISS
|
|
|
KEGG |
|
|
Protein |
NP_001030662.1
NP_001327345.1
NP_001327346.1
NP_001327347.1
NP_001327348.1
NP_001327349.1
NP_001327350.1
NP_001327351.1
NP_187571.2
|
BLAST |
NP_001030662.1
NP_001327345.1
NP_001327346.1
NP_001327347.1
NP_001327348.1
NP_001327349.1
NP_001327350.1
NP_001327351.1
NP_187571.2
|
Orthologous |
[Ortholog page]
MYB118 (gma)
LCL1 (ath)
LOC7467599 (ppo)
LOC25484055 (mtr)
LOC100249962 (vvi)
LOC100783482 (gma)
LOC100797466 (gma)
LOC100807156 (gma)
LOC101253545 (sly)
LOC103847419 (bra)
LOC103848060 (bra)
LOC103855503 (bra)
LOC103870531 (bra)
|
Subcellular localization wolf |
nucl 9,
plas 1,
cysk 1,
cysk_plas 1
|
(predict for NP_001030662.1)
|
nucl 8,
chlo 1,
cyto 1,
plas 1,
cyto_plas 1
|
(predict for NP_001327345.1)
|
nucl 9,
chlo 1,
plas 1
|
(predict for NP_001327346.1)
|
nucl 9,
chlo 1,
plas 1
|
(predict for NP_001327347.1)
|
nucl 9,
cyto 1,
plas 1,
cyto_plas 1
|
(predict for NP_001327348.1)
|
nucl 9,
plas 1,
cysk 1,
cysk_plas 1
|
(predict for NP_001327349.1)
|
nucl 8,
chlo 1,
cyto 1,
plas 1,
cyto_plas 1
|
(predict for NP_001327350.1)
|
nucl 8,
cyto 1,
plas 1,
cysk 1,
cysk_plas 1,
cyto_plas 1
|
(predict for NP_001327351.1)
|
nucl 9,
cyto 1,
plas 1,
cyto_plas 1
|
(predict for NP_187571.2)
|
|
Subcellular localization TargetP |
chlo 7,
other 3
|
(predict for NP_001030662.1)
|
other 7
|
(predict for NP_001327345.1)
|
other 7
|
(predict for NP_001327346.1)
|
other 7
|
(predict for NP_001327347.1)
|
chlo 7,
other 3
|
(predict for NP_001327348.1)
|
chlo 7,
other 3
|
(predict for NP_001327349.1)
|
other 7
|
(predict for NP_001327350.1)
|
chlo 7,
other 3
|
(predict for NP_001327351.1)
|
chlo 7,
other 3
|
(predict for NP_187571.2)
|
|
Gene coexpression |
Network*for coexpressed genes |
KEGG* ID |
Title |
#genes |
Link to the KEGG* map (Multiple genes) |
ath04712 |
Circadian rhythm - plant |
2 |
|
Genes directly connected with RVE8 on the network
coex z* |
Locus |
Function* |
Coexpression detail |
Entrez Gene ID* |
16.3 |
LHY |
Homeodomain-like superfamily protein |
[detail] |
839341 |
13.4 |
CCA1 |
circadian clock associated 1 |
[detail] |
819296 |
10.6 |
BBX19 |
B-box type zinc finger family protein |
[detail] |
830051 |
5.5 |
AT1G70250 |
receptor serine/threonine kinase |
[detail] |
843361 |
4.7 |
AT5G62130 |
Per1-like family protein |
[detail] |
836333 |
|
Coexpressed gene list |
[Coexpressed gene list for RVE8]
|
Gene expression |
All samples |
[Expression pattern for all samples]
|
AtGenExpress* (Development) |
258724_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress* (Stress) |
258724_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress* (Hormone) |
258724_at
X axis is samples (xls file), and Y axis is log-expression.
|