[←][→] ath   AT3G19210 Gene
functional annotation
Function   DNA repair/recombination protein  
GO BP
GO:0071480 [list] [network] cellular response to gamma radiation  (4 genes)  IEP  
GO:0045003 [list] [network] double-strand break repair via synthesis-dependent strand annealing  (7 genes)  IBA IDA IMP  
GO:0010332 [list] [network] response to gamma radiation  (16 genes)  IEP  
GO:0071248 [list] [network] cellular response to metal ion  (21 genes)  IEP  
GO:0051701 [list] [network] interaction with host  (32 genes)  IPI  
GO:0007131 [list] [network] reciprocal meiotic recombination  (49 genes)  IBA  
GO:0016032 [list] [network] viral process  (63 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (68 genes)  IMP  
GO:0051301 [list] [network] cell division  (352 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO MF
GO:0015616 [list] [network] DNA translocase activity  (3 genes)  IBA  
GO:0004386 [list] [network] helicase activity  (157 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03440 [list] [network] Homologous recombination (67 genes)
Protein NP_001189933.1  NP_001325757.1  NP_188552.3 
BLAST NP_001189933.1  NP_001325757.1  NP_188552.3 
Orthologous [Ortholog page] LOC4330819 (osa)  LOC25494466 (mtr)  LOC100246859 (vvi)  LOC100781631 (gma)  LOC101255388 (sly)  LOC103627774 (zma)  LOC103869485 (bra) 
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001189933.1)
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001325757.1)
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_188552.3)
Subcellular
localization
TargetP
other 9  (predict for NP_001189933.1)
other 9  (predict for NP_001325757.1)
other 9  (predict for NP_188552.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 6
ath03430 Mismatch repair 2
Genes directly connected with RAD54 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.4 AT4G02110 transcription coactivator [detail] 828135
8.2 FANCM DEAD/DEAH box RNA helicase family protein [detail] 840448
8.0 AT3G27120 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 822331
7.4 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 820879
5.6 NP1 NPK1-related protein kinase 1 [detail] 837421
Coexpressed
gene list		 [Coexpressed gene list for RAD54]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257027_at
257027_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257027_at
257027_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
257027_at
257027_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 821455      
Refseq ID (protein) NP_001189933.1 
NP_001325757.1 
NP_188552.3 


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