[←][→] ath   At3g19210 Gene
functional annotation
Function   DNA repair/recombination protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0071480 [list] [network] cellular response to gamma radiation  (2 genes)  IEP  
GO:0045003 [list] [network] double-strand break repair via synthesis-dependent strand annealing  (6 genes)  IDA IMP  
GO:0010332 [list] [network] response to gamma radiation  (14 genes)  IEP  
GO:0071248 [list] [network] cellular response to metal ion  (17 genes)  IEP  
GO:0051701 [list] [network] biological process involved in interaction with host  (27 genes)  IPI  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (40 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (21 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03440 [list] [network] Homologous recombination (60 genes)
Protein NP_001189933.1  NP_001325757.1  NP_188552.3 
BLAST NP_001189933.1  NP_001325757.1  NP_188552.3 
Orthologous [Ortholog page] LOC4330819 (osa)  LOC18097791 (ppo)  LOC25494466 (mtr)  LOC100781631 (gma)  LOC101255388 (sly)  LOC103869485 (bra)  LOC123128487 (tae)  LOC123145612 (tae)  LOC123402879 (hvu) 
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001189933.1)
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001325757.1)
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_188552.3)
Subcellular
localization
TargetP
other 9  (predict for NP_001189933.1)
other 9  (predict for NP_001325757.1)
other 9  (predict for NP_188552.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 7
ath03030 DNA replication 2
ath03420 Nucleotide excision repair 2
ath03430 Mismatch repair 2
Genes directly connected with RAD54 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.9 AT4G02110 transcription coactivator [detail] 828135
8.3 AT4G14970 fanconi anemia group D2 protein [detail] 827156
8.0 WEE1 WEE1-like kinase [detail] 839453
Coexpressed
gene list		 [Coexpressed gene list for RAD54]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257027_at
257027_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257027_at
257027_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
257027_at
257027_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 821455      
Refseq ID (protein) NP_001189933.1 
NP_001325757.1 
NP_188552.3 


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