functional annotation |
Function |
DNA repair/recombination protein |
|
GO BP |
GO:0071480 [list] [network] cellular response to gamma radiation
|
(4 genes)
|
IEP
|
|
GO:0045003 [list] [network] double-strand break repair via synthesis-dependent strand annealing
|
(7 genes)
|
IBA
IDA
IMP
|
|
GO:0010332 [list] [network] response to gamma radiation
|
(16 genes)
|
IEP
|
|
GO:0071248 [list] [network] cellular response to metal ion
|
(21 genes)
|
IEP
|
|
GO:0051701 [list] [network] interaction with host
|
(32 genes)
|
IPI
|
|
GO:0007131 [list] [network] reciprocal meiotic recombination
|
(49 genes)
|
IBA
|
|
GO:0016032 [list] [network] viral process
|
(63 genes)
|
IEA
|
|
GO:0000724 [list] [network] double-strand break repair via homologous recombination
|
(68 genes)
|
IMP
|
|
GO:0051301 [list] [network] cell division
|
(352 genes)
|
IEA
|
|
|
GO CC |
|
GO MF |
|
KEGG |
ath03440 [list] [network] Homologous recombination (67 genes) |
|
Protein |
NP_001189933.1
NP_001325757.1
NP_188552.3
|
BLAST |
NP_001189933.1
NP_001325757.1
NP_188552.3
|
Orthologous |
[Ortholog page]
LOC4330819 (osa)
LOC25494466 (mtr)
LOC100246859 (vvi)
LOC100781631 (gma)
LOC101255388 (sly)
LOC103627774 (zma)
LOC103869485 (bra)
|
Subcellular localization wolf |
nucl 7,
cyto 1,
chlo 1,
vacu 1,
cyto_pero 1,
cyto_E.R. 1,
cyto_plas 1
|
(predict for NP_001189933.1)
|
nucl 7,
cyto 1,
chlo 1,
vacu 1,
cyto_pero 1,
cyto_E.R. 1,
cyto_plas 1
|
(predict for NP_001325757.1)
|
nucl 7,
cyto 1,
chlo 1,
vacu 1,
cyto_pero 1,
cyto_E.R. 1,
cyto_plas 1
|
(predict for NP_188552.3)
|
|
Subcellular localization TargetP |
other 9
|
(predict for NP_001189933.1)
|
other 9
|
(predict for NP_001325757.1)
|
other 9
|
(predict for NP_188552.3)
|
|
Gene coexpression |
Network*for coexpressed genes |
KEGG* ID |
Title |
#genes |
Link to the KEGG* map (Multiple genes) |
ath03440 |
Homologous recombination |
6 |
|
ath03430 |
Mismatch repair |
2 |
|
Genes directly connected with RAD54 on the network
coex z* |
Locus |
Function* |
Coexpression detail |
Entrez Gene ID* |
11.4 |
AT4G02110 |
transcription coactivator |
[detail] |
828135 |
8.2 |
FANCM |
DEAD/DEAH box RNA helicase family protein |
[detail] |
840448 |
8.0 |
AT3G27120 |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
[detail] |
822331 |
7.4 |
CDC27a |
Tetratricopeptide repeat (TPR)-like superfamily protein |
[detail] |
820879 |
5.6 |
NP1 |
NPK1-related protein kinase 1 |
[detail] |
837421 |
|
Coexpressed gene list |
[Coexpressed gene list for RAD54]
|
Gene expression |
All samples |
[Expression pattern for all samples]
|
AtGenExpress* (Development) |
257027_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress* (Stress) |
257027_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress* (Hormone) |
257027_at
X axis is samples (xls file), and Y axis is log-expression.
|