| functional annotation |
| Function |
LSD1 zinc finger family protein |
|
| GO BP |
|
GO:0010602 [list] [network] regulation of 1-aminocyclopropane-1-carboxylate metabolic process
|
(1 genes)
|
IMP
|
 |
|
GO:0010618 [list] [network] aerenchyma formation
|
(3 genes)
|
IMP
|
|
|
GO:0002240 [list] [network] response to molecule of oomycetes origin
|
(4 genes)
|
IMP
|
|
|
GO:0000303 [list] [network] response to superoxide
|
(13 genes)
|
IMP
|
|
|
GO:0009862 [list] [network] systemic acquired resistance, salicylic acid mediated signaling pathway
|
(15 genes)
|
IEP
|
|
|
GO:0010310 [list] [network] regulation of hydrogen peroxide metabolic process
|
(15 genes)
|
IMP
|
|
|
GO:0010104 [list] [network] regulation of ethylene-activated signaling pathway
|
(24 genes)
|
IMP
|
|
|
GO:0043069 [list] [network] negative regulation of programmed cell death
|
(26 genes)
|
IGI
|
|
|
GO:0043067 [list] [network] regulation of programmed cell death
|
(62 genes)
|
IGI
|
|
|
GO:0009626 [list] [network] plant-type hypersensitive response
|
(73 genes)
|
IEA
IMP
|
|
|
GO:0008219 [list] [network] cell death
|
(127 genes)
|
IMP
|
|
|
GO:0001666 [list] [network] response to hypoxia
|
(263 genes)
|
IMP
|
|
|
| GO CC |
|
GO:0005576 [list] [network] extracellular region
|
(3363 genes)
|
ISM
|
|
|
GO:0005634 [list] [network] nucleus
|
(10793 genes)
|
IEA
|
|
|
GO:0005737 [list] [network] cytoplasm
|
(14855 genes)
|
IEA
|
|
|
| GO MF |
|
GO:0003700 [list] [network] DNA-binding transcription factor activity
|
(1599 genes)
|
TAS
|
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
| KEGG |
|
|
| Protein |
NP_001031678.1
NP_001031679.1
NP_001031680.2
NP_001078413.1
NP_001154257.1
NP_001328264.1
NP_567599.3
NP_849548.1
NP_849549.1
|
| BLAST |
NP_001031678.1
NP_001031679.1
NP_001031680.2
NP_001078413.1
NP_001154257.1
NP_001328264.1
NP_567599.3
NP_849548.1
NP_849549.1
|
| Orthologous |
[Ortholog page]
LOC4333536 (osa)
LOC4352767 (osa)
LOC7455048 (ppo)
LOC7490691 (ppo)
LOC11427425 (mtr)
LOC25486678 (mtr)
LOC100194364 (zma)
LOC100242577 (vvi)
LOC100285990 (zma)
LOC100527656 (gma)
LOC100776394 (gma)
LOC100776644 (gma)
LOC100792570 (gma)
LOC101253843 (sly)
LOC101265799 (sly)
LOC103834161 (bra)
LOC103858192 (bra)
LOC103861197 (bra)
|
Subcellular
localization
wolf |
|
chlo 9,
nucl 1,
vacu 1
|
(predict for NP_001031678.1)
|
|
chlo 9,
nucl 1,
vacu 1
|
(predict for NP_001031679.1)
|
|
chlo 9,
nucl 1,
vacu 1
|
(predict for NP_001031680.2)
|
|
chlo 9
|
(predict for NP_001078413.1)
|
|
chlo 9
|
(predict for NP_001154257.1)
|
|
chlo 7,
cyto 1,
mito 1,
cysk 1,
cyto_nucl 1,
cyto_pero 1,
cyto_E.R. 1,
cyto_plas 1
|
(predict for NP_001328264.1)
|
|
chlo 9,
nucl 1,
vacu 1
|
(predict for NP_567599.3)
|
|
chlo 9,
nucl 1,
vacu 1
|
(predict for NP_849548.1)
|
|
chlo 9
|
(predict for NP_849549.1)
|
|
Subcellular
localization
TargetP |
|
mito 2
|
(predict for NP_001031678.1)
|
|
mito 2
|
(predict for NP_001031679.1)
|
|
mito 2
|
(predict for NP_001031680.2)
|
|
other 5
|
(predict for NP_001078413.1)
|
|
mito 2
|
(predict for NP_001154257.1)
|
|
mito 2
|
(predict for NP_001328264.1)
|
|
mito 2
|
(predict for NP_567599.3)
|
|
mito 2
|
(predict for NP_849548.1)
|
|
other 5
|
(predict for NP_849549.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
Genes directly connected with LSD1 on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 8.2 |
RPL18AA |
60S ribosomal protein L18A-1 |
[detail] |
839876 |
| 7.7 |
AT4G26400 |
RING/U-box superfamily protein |
[detail] |
828746 |
| 7.6 |
AT5G05100 |
Single-stranded nucleic acid binding R3H protein |
[detail] |
830392 |
| 6.7 |
AT4G33940 |
RING/U-box superfamily protein |
[detail] |
829539 |
| 6.2 |
bHLH121 |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
[detail] |
821523 |
| 6.1 |
AT1G70590 |
F-box family protein |
[detail] |
843396 |
| 5.9 |
AT4G24730 |
manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like protein |
[detail] |
828575 |
| 5.8 |
AT5G62460 |
RING/FYVE/PHD zinc finger superfamily protein |
[detail] |
836366 |
| 5.8 |
AT4G30390 |
UDP-arabinopyranose mutase |
[detail] |
829162 |
|
Coexpressed
gene list |
[Coexpressed gene list for LSD1]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
254477_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
254477_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
254477_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT4G20380 Gene
