CoexViewer

Coexpression detail for RIE1 and AT3G04970
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath RIE1 RING-finger protein for embryogenesi 814703 At2g01735 0.52 5.60 4.77 4.92 93.80 1.85 2.55 1.98 1.76 1.82 0.64
ath AT3G04970 DHHC-type zinc finger family protein 819657 At3g04970 0.52
Platform:

coex z = 4.7658



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 814703
(z-scored expression)		 819657
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
33.1 -6.4 -5.2 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
24.2 -5.2 -4.7 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
20.9 -5.0 -4.2 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
20.3 4.4 4.6 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
20.1 -4.1 -4.9 ERP115370 ERR3333443 Arabidopsis tissue atlas
18.2 4.0 4.5 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
16.7 -4.5 -3.7 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
16.7 -4.1 -4.1 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
16.6 -4.1 -4.0 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
15.9 -3.8 -4.1 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
15.4 -3.3 -4.6 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
15.3 -4.0 -3.8 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
14.8 -3.2 -4.6 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
14.7 -3.6 -4.1 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
14.5 -3.6 -4.0 SRP361288 SRR18124820 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
14.1 -3.9 -3.6 SRP163443 SRR8060876 RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration
13.8 -3.8 -3.6 SRP165731 SRR8054398 The embryonic transcriptome of Arabidopsis thaliana
13.8 -3.8 -3.6 SRP165731 SRR8054399 The embryonic transcriptome of Arabidopsis thaliana
13.5 -3.7 -3.6 SRP063017 SRR2221844 RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes
13.5 -3.0 -4.4 SRP102178 SRR5360867 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
13.4 4.3 3.1 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.3 3.2 4.1 SRP103736 SRR5440841 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
12.9 -3.7 -3.5 SRP104760 SRR5467217 Interactions between effector-triggered immunity (ETI) and pattern-triggered immunity (PTI) in an Arabidopsis dde2 ein2 pad4 sid2 mutant
12.5 3.7 3.3 SRP266133 SRR11934683 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
12.4 -3.3 -3.8 SRP050945 SRR1696859 Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana
12.4 -3.4 -3.6 SRP173260 SRR8310903 Functional relationship of GUN1 and FUG1 in plastid proteostasis
12.4 -3.7 -3.3 SRP100064 SRR5263057 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
11.8 -3.4 -3.5 SRP073485 SRR3401789 Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation
11.6 -3.6 -3.2 SRP073724 SRR3419765 Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
11.6 3.4 3.4 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.4 -3.9 -3.0 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
11.4 3.5 3.3 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
11.3 -3.3 -3.4 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.3 3.6 3.1 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
10.8 3.1 3.5 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.7 -3.5 -3.0 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.7 -2.0 -5.4 SRP154321 SRR7536110 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [Timecourse]
10.7 -2.9 -3.6 SRP083970 SRR4115362 The Cytoplasmic mRNA Decay Landscape of Arabidopsis Seedlings [RNA-seq]
10.5 -3.6 -2.9 SRP297920 SRR13253061 Transcript analysis under phosphate and iron deprivation in 7 day old Arabidopsis thaliana seedlings
10.5 3.3 3.2 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 -2.8 -3.7 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
10.4 3.5 3.0 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
10.1 2.9 3.5 SRP095347 SRR5120250 Genetic influences on gene expression in Arabidopsis thaliana
10.1 3.2 3.1 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
Note: Samples whose contribution is more than 10 are outputted.



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