• Yellow: Tohoku university
• Red: Tokyo Institute of Technology
• Red: Human Genome Center, Institute of Medical Sciences, the University of Tokyo

Our main publications for the construction of coexpressed gene databases

• Obayashi T, Kinoshita K. (2010) Coexpression landscape in ATTED-II: usage of gene list and gene network for various types of pathways. J Plant Res., 123, 311-9.
• Obayashi T, Hayashi S, Saeki M, Ohta H, Kinoshita K. (2009) ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res., 37, D987-91.
• Obayashi T, Kinoshita K. (2009) Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression. DNA Res., 16, 249-60.
• Kinoshita K, Obayashi T. (2009) Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis. Bioinformatics., 25. 2677-84.
• Obayashi T, Hayashi S, Shibaoka M, Saeki M, Ohta H, Kinoshita K. (2008) COXPRESdb: a database of coexpressed gene networks in mammals. Nucleic Acids Res., 36. D77-82.
• Obayashi T, Kinoshita K, Nakai K, Shibaoka M, Hayashi S, Saeki M, Shibata D, Saito K, Ohta H. (2007) ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res., 35, D863-9.