CoexViewer

Coexpression detail for GRF1 and HAM1
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath GRF1 growth-regulating factor 1 816815 At2g22840 0.56 4.68 3.75 4.35 6117.50 1.53 0.07 1.91 0.11 0.51 1.69
ath HAM1 GRAS family transcription factor 819124 At2g45160 0.56
Platform:

coex z = 3.7515



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 816815
(z-scored expression)		 819124
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
28.8 -6.4 -4.5 ERP115370 ERR3333443 Arabidopsis tissue atlas
27.2 -4.9 -5.6 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
24.5 -4.5 -5.4 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
17.8 -3.8 -4.7 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
12.5 -3.2 -3.9 SRP272650 SRR12272429 Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity
12.3 -3.1 -4.0 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
12.2 -3.4 -3.6 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
12.1 3.3 3.6 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
12.0 3.3 3.6 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
11.7 -2.9 -4.0 SRP324081 SRR14813615 ARATH-IN-OUT
11.7 -2.9 -4.0 SRP362867 SRR18254735 Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses
11.7 3.3 3.5 SRP103736 SRR5440841 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
11.3 3.6 3.2 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
11.3 -3.2 -3.5 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.2 2.8 4.0 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.2 3.4 3.3 ERP123539 ERR4471742 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
11.2 -3.1 -3.6 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.1 -3.5 -3.1 SRP100712 SRR5285650 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
11.1 -2.8 -3.9 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
11.0 -2.1 -5.2 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
10.9 -3.8 -2.8 SRP101641 SRR5330614 Chloroplast signalling gates thermotolerance in Arabidopsis
10.8 -3.0 -3.6 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
10.8 -3.7 -2.9 SRP126872 SRR6381405 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
10.7 -3.9 -2.8 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
10.6 -2.9 -3.6 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
10.6 -3.5 -3.0 SRP302122 SRR13450896 The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis [RNA-seq]
10.5 -3.4 -3.1 SRP163443 SRR8060876 RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration
10.5 -4.2 -2.5 SRP285902 SRR12747511 ­Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis
10.5 3.1 3.4 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
10.4 -3.1 -3.4 SRP279454 SRR12554216 RNA-seq analysis of WT, aipp3, aipp2, paipp2, aipp2/paipp2, cpl2, lhp1, and clf in Arabidopsis
10.3 -3.4 -3.0 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
10.2 -2.4 -4.3 SRP251062 SRR11206305 Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants
10.1 -2.7 -3.7 SRP050945 SRR1696859 Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana
10.1 -3.5 -2.8 SRP101274 SRR5308792 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
Note: Samples whose contribution is more than 10 are outputted.



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