CoexViewer
Coexpression detail for SPIK and AT1G30710
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | SPIK | Shaker pollen inward K+ channel | 817099 | At2g25600 | 0.01 | 5.04 | 2.57 | 6.14 | 1290.50 | 2.97 | 1.09 | -0.14 | 2.20 | 1.58 | 2.26 | |
| ath | AT1G30710 | FAD-binding Berberine family protein | 839951 | At1g30710 | 0.01 |
|
coex z = 2.5709 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 817099 (z-scored expression) |
839951 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 47.6 | 4.4 | 10.8 | SRP097877 | SRR5205608 | An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 28.0 | 4.5 | 6.3 | SRP326522 | SRR15015712 | Cell-wall damage activates DOF transcription factors to promote wound healing and tissue regeneration in Arabidopsis thaliana |
| 27.3 | 3.2 | 8.5 | SRP091641 | SRR4426674 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 25.2 | 4.1 | 6.1 | SRP098906 | SRR5231015 | The PIF4 controlled auxin pathway contributes to hybrid vigor in Arabidopsis thaliana |
| 24.8 | 3.7 | 6.8 | SRP285380 | SRR12712268 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 24.3 | 2.0 | 12.4 | SRP158306 | SRR7694790 | Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq] |
| 22.7 | 2.5 | 9.3 | SRP220476 | SRR10072750 | Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants |
| 22.7 | 2.5 | 9.3 | SRP220476 | SRR10072749 | Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants |
| 21.1 | 2.3 | 9.3 | SRP100064 | SRR5263187 | Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary? |
| 19.5 | 3.4 | 5.8 | ERP116123 | ERR3414914 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 18.8 | 2.0 | 9.6 | SRP158306 | SRR7694868 | Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq] |
| 17.4 | 3.1 | 5.6 | SRP112501 | SRR5831030 | Combining chemical and genetic approaches to increase drought resistance in plants |
| 17.4 | 5.1 | 3.4 | SRP285868 | SRR12746015 | Transcriptional responses of wild-type and zin1 mutant Arabidopsis plants to infection with Pseudomonas syringae |
| 16.9 | 3.2 | 5.3 | SRP091641 | SRR4426670 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 16.9 | 3.7 | 4.6 | ERP116123 | ERR3414913 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 16.0 | 2.6 | 6.2 | SRP277946 | SRR12470101 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 15.7 | 3.4 | 4.6 | ERP116123 | ERR3414912 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 15.3 | 2.1 | 7.3 | SRP214585 | SRR9681568 | Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins |
| 15.2 | 2.5 | 6.0 | SRP074436 | SRR3478319 | Arabidopsis thaliana treatments to trigger somatic embryo formation under RNAseq |
| 15.0 | 2.7 | 5.5 | SRP136326 | SRR6941661 | Knock-down of phosphoserine phosphatase gene effects rather N- than S-metabolism in Arabidopsis thaliana |
| 13.9 | 3.0 | 4.6 | ERP116123 | ERR3414908 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 13.4 | 1.4 | 9.6 | SRP158306 | SRR7695234 | Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq] |
| 12.6 | 2.5 | 5.2 | SRP093765 | SRR5045288 | Transcriptome analysis after IAA paste application on pin1 mutant inflorescence meristems |
| 12.3 | 2.1 | 5.7 | SRP039091 | SRR1179971 | Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource |
| 11.9 | 3.3 | 3.6 | SRP199045 | SRR9099097 | SERRATE recruits the NEXT complex to control the levels of miRNA precursors in Arabidopsis |
| 10.9 | 2.1 | 5.3 | SRP091641 | SRR4426583 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.9 | 2.1 | 5.3 | SRP091641 | SRR4426731 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.9 | 2.1 | 5.3 | SRP091641 | SRR4426821 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.9 | 2.1 | 5.3 | SRP091641 | SRR4426906 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.9 | 2.3 | 4.6 | ERP116123 | ERR3414893 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 10.5 | 2.2 | 4.7 | SRP277946 | SRR12470022 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.5 | 2.2 | 4.7 | SRP277946 | SRR12470204 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.2 | 2.6 | 3.8 | SRP218723 | SRR9995082 | Plant 22-nt siRNAs mediate translational repression and stress adaptation |
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