CoexViewer

Coexpression detail for AT2G28540 and AT4G34280
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-e.c1-0
ath AT2G28540 RNA binding (RRM/RBD/RNP motifs) family protein 817402 At2g28540 0.78 6.87 7.39 3.29
ath AT4G34280 transducin family protein / WD-40 repeat family protein 829578 At4g34280 0.78
Platform:

coex z = 7.393



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 817402
(z-scored expression)		 829578
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
36.3 -6.3 -5.7 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
28.1 -5.4 -5.2 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
27.2 -5.4 -5.1 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
24.0 -5.0 -4.8 SRP090458 SRR4295856 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
23.9 -4.6 -5.2 SRP229078 SRR10416643 Global transcriptomic analysis of Arabidopsis thaliana ecotype Columbia-0 subjected to magnesium deficiency
22.2 4.2 5.3 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
19.9 -4.8 -4.2 SRP165731 SRR8054398 The embryonic transcriptome of Arabidopsis thaliana
18.0 4.2 4.3 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
18.0 3.6 4.9 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
17.9 -4.0 -4.5 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
17.3 -4.2 -4.1 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
17.2 -4.5 -3.8 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
17.1 -4.1 -4.2 SRP100712 SRR5285678 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
16.7 -3.8 -4.4 SRP101274 SRR5308820 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
16.2 4.2 3.9 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
16.1 -4.3 -3.7 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
15.5 -4.0 -3.9 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
15.2 4.0 3.8 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.4 -3.8 -3.8 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
14.4 3.9 3.7 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.2 -3.7 -3.8 SRP093913 SRR5054306 Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis
14.1 -3.4 -4.2 SRP251062 SRR11206305 Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants
14.1 -3.2 -4.4 SRP103817 SRR5444474 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
13.8 -3.8 -3.6 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
13.8 -3.2 -4.3 SRP155742 SRR8699957 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
13.4 -4.0 -3.3 SRP272650 SRR12272429 Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity
13.3 -3.7 -3.6 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
13.3 3.6 3.7 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
13.2 3.7 3.6 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
13.0 -4.3 -3.0 SRP176451 SRR8404535 Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq]
12.9 -3.8 -3.3 SRP039091 SRR1179986 Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource
12.8 3.6 3.5 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
12.4 -3.8 -3.3 ERP115370 ERR3333436 Arabidopsis tissue atlas
12.4 3.5 3.5 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.2 -3.4 -3.6 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
12.2 -3.5 -3.4 SRP269252 SRR12110257 Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length
12.2 3.5 3.5 SRP277946 SRR12470201 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.2 -4.7 -2.6 ERP118109 ERR3624434 Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
12.2 3.3 3.7 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.1 3.6 3.3 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
12.0 -3.9 -3.1 ERP116123 ERR3414638 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
11.9 -3.4 -3.5 SRP126872 SRR6381404 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
11.7 -3.6 -3.3 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
11.4 3.5 3.3 SRP266133 SRR11934683 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
11.4 -3.4 -3.3 SRP073724 SRR3419765 Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
11.3 -3.9 -2.9 SRP103736 SRR5440845 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
11.2 -3.4 -3.3 SRP091641 SRR4426344 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
11.2 3.5 3.2 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.1 -3.5 -3.1 SRP126872 SRR6381405 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
11.1 -3.4 -3.3 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.0 3.2 3.5 SRP277946 SRR12470189 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.9 -3.1 -3.5 SRP150217 SRR7289570 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.9 -2.8 -3.8 SRP371011 SRR18808243 Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation
10.8 -3.3 -3.3 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.6 3.4 3.1 SRP277946 SRR12469632 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.6 -3.0 -3.5 SRP163443 SRR8060876 RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration
10.5 3.5 3.0 SRP166137 SRR8078926 RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana)
10.5 3.4 3.1 SRP311610 SRR14028736 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.1 -3.1 -3.3 SRP218723 SRR9995085 Plant 22-nt siRNAs mediate translational repression and stress adaptation
10.1 -3.0 -3.3 SRP091641 SRR4426947 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
Note: Samples whose contribution is more than 10 are outputted.



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