CoexViewer

Coexpression detail for AT2G39725 and AT3G62920
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT2G39725 LYR family of Fe/S cluster biogenesis protein 818557 At2g39725 0.28 5.79 3.92 6.11 56.50 1.09 2.40 2.65 2.05 0.40 0.55
ath AT3G62920 zinc metalloproteinase aureolysin 825467 At3g62920 0.28
Platform:

coex z = 3.9178



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 818557
(z-scored expression)		 825467
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
31.7 -5.4 -5.9 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
18.0 -4.2 -4.3 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
17.6 -4.0 -4.4 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
17.3 -4.9 -3.5 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
16.9 -2.1 -8.1 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
16.5 -2.0 -8.2 SRP097877 SRR5205787 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
15.6 -3.1 -5.0 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
14.6 -8.0 -1.8 SRP158306 SRR7694707 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
14.2 -3.5 -4.1 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
14.2 -6.1 -2.3 SRP277946 SRR12469560 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.2 -6.1 -2.3 SRP277946 SRR12469898 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.1 -3.2 -4.3 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
13.9 -5.0 -2.8 SRP214325 SRR9672816 Temporal comparison of leaf transcriptomes between early-flowering Arabidopsis thaliana atx1/atx3/atx4 triple mutants and vegetative WT Col-0 plants of the same age.
13.4 -2.4 -5.5 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
12.9 -6.0 -2.2 SRP345854 SRR16934651 Phytochrome B regulates reactive oxygen signaling during stress in plants.
12.8 -2.9 -4.4 ERP116123 ERR3414642 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.7 -3.5 -3.6 SRP365413 SRR18441257 Profiling of bulk and ribosome associated mRNA of Arabidopsis roots upon lateral root induction upon TOR activity inhibition with AZD8055 [dataset2]
12.5 -2.7 -4.6 SRP091641 SRR4426350 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
12.5 -4.4 -2.8 SRP154321 SRR7536069 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [Timecourse]
12.4 -2.7 -4.6 SRP214585 SRR9681483 Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins
12.3 3.6 3.4 SRP244461 SRR10959655 CASPARIAN STRIP INTEGRITY FACTOR 2 (CIF2) peptide induces SCHENGEN3 (SGN3) receptor-kinase dependent transcriptional changes
12.1 -3.9 -3.1 SRP234996 SRR10603562 Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity
11.9 -2.6 -4.6 SRP187381 SRR8662375 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
11.6 -3.3 -3.5 SRP101641 SRR5330626 Chloroplast signalling gates thermotolerance in Arabidopsis
11.5 -3.3 -3.5 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
11.0 -5.2 -2.1 SRP074485 SRR3480157 Spatiotemporal analysis of shade-induced transcriptional reprogramming in Arabidopsis reveals patterns underlying organ-specific growth
10.7 -2.5 -4.3 SRP126872 SRR6381405 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
10.6 3.5 3.0 ERP015521 ERR1406301 Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
10.5 -3.0 -3.5 SRP114806 SRR5894475 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
10.4 -3.7 -2.8 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
10.4 3.3 3.2 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
10.4 -3.5 -3.0 SRP126574 SRR6369550 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
10.0 -2.5 -3.9 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
Note: Samples whose contribution is more than 10 are outputted.



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