CoexViewer

Coexpression detail for AT2G39750 and PUM4
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-e.c1-0
ath AT2G39750 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 818560 At2g39750 0.7 5.66 6.08 5.10
ath PUM4 pumilio 4 820198 At3g10360 0.7
Platform:

coex z = 6.0794



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 818560
(z-scored expression)		 820198
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
45.0 -6.9 -6.5 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
29.7 -5.4 -5.5 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
27.6 -5.9 -4.7 SRP114806 SRR5894583 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
23.1 -7.6 -3.0 SRP155742 SRR8699957 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
21.3 -4.6 -4.7 SRP258701 SRR11614791 Ethylene modulates the dynamics of translation via GCN2 and EIN2 in Arabidopsis under submergence
19.3 4.6 4.2 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
19.2 -4.3 -4.5 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
19.1 -3.8 -5.1 SRP277946 SRR12469812 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
18.1 -4.0 -4.5 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
17.7 -3.7 -4.8 SRP137763 SRR6950045 The SOG1 transcriptional activator and the MYB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [RNA-seq t vs t0]
17.4 -3.1 -5.6 SRP277946 SRR12469574 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
17.4 -5.8 -3.0 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
17.3 -2.7 -6.4 SRP100712 SRR5285721 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
16.4 -3.6 -4.6 SRP090913 SRR4360366 WallOmics
16.0 4.3 3.8 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
15.8 -3.9 -4.1 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
15.3 -3.7 -4.1 SRP076846 SRR3707344 The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status (mRNA-seq)
15.1 -2.0 -7.7 SRP100064 SRR5263035 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
15.1 -3.8 -4.0 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
14.9 -3.9 -3.8 SRP119870 SRR6166379 Transcriptomic characterization of spl7 and Col-0 ecotypes of Arabidopsis reveals new aspects of Fe-Cu crosstalk
14.7 -4.0 -3.7 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
14.5 -3.7 -4.0 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
14.4 -5.0 -2.9 SRP267137 SRR12005730 ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
14.4 -3.8 -3.7 SRP093913 SRR5054306 Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis
14.0 3.6 3.9 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
13.9 3.9 3.6 SRP277946 SRR12470201 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.6 3.6 3.8 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.3 -3.9 -3.4 ERP116123 ERR3414638 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.9 3.7 3.5 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.6 3.6 3.5 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
12.6 -3.3 -3.9 ERP116123 ERR3414641 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.4 -3.0 -4.1 SRP176451 SRR8404535 Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq]
12.4 -3.6 -3.4 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
12.1 -2.9 -4.1 SRP288594 SRR12899060 Transcriptional response of A. thaliana Root and Shoot tissue to light stress and presence of microbial communities in myc2-3 and MYC2-Flag lines
12.0 -2.2 -5.5 SRP101274 SRR5308863 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
12.0 3.5 3.4 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.9 -3.5 -3.4 SRP105272 SRR5482528 Cell type transcriptomic profile of the Arabidopsis root stem cell niche
11.9 -3.7 -3.3 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
11.9 -3.3 -3.6 SRP201680 SRR9313625 RNA-seq of 14 days old arabidopsis in Col hda6 ldl1/2 and hda6/ldl1/2
11.8 3.4 3.4 SRP277946 SRR12469632 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.8 3.5 3.4 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.8 -3.5 -3.3 SRP150217 SRR7289570 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.8 -3.2 -3.7 SRP091641 SRR4426632 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
11.7 -3.5 -3.4 SRP311610 SRR14028822 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
11.7 -3.5 -3.4 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.6 3.6 3.2 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
11.6 -2.6 -4.4 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
11.6 -3.2 -3.6 ERP116123 ERR3414637 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
11.6 3.1 3.7 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.5 -3.2 -3.5 SRP272650 SRR12272429 Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity
11.5 -3.7 -3.1 SRP249854 SRR11103165 A dynamic pattern of local auxin sources is required for root regeneration
11.4 3.3 3.5 SRP051763 SRR1744361 Hybrid Mimics and Hybrid Vigor in Arabidopsis (F4 data)
11.4 -1.8 -6.5 SRP090458 SRR4295856 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
11.4 3.6 3.2 SRP311610 SRR14028738 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
11.3 -3.7 -3.0 SRP145580 SRR7160920 Gene expression responses to ABA and to osmotic stress in the pyl112458 379101112 mutant
11.2 -3.5 -3.2 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.0 -3.1 -3.6 SRP269252 SRR12110257 Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length
10.9 -3.8 -2.9 SRP324081 SRR14813615 ARATH-IN-OUT
10.9 -3.8 -2.9 SRP362867 SRR18254735 Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses
10.9 2.5 4.4 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
10.8 3.3 3.3 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
10.7 -3.2 -3.4 SRP073724 SRR3419765 Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
10.7 3.3 3.2 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
10.6 3.5 3.0 SRP311610 SRR14028739 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.6 3.5 3.0 SRP311610 SRR14028737 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.5 -3.3 -3.2 SRP249648 SRR11093803 Gene dosge responses in nascent Arabidopsis thaliana polyploids
10.5 -3.4 -3.0 SRP114806 SRR5894404 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
10.5 -2.9 -3.6 SRP065807 SRR2927349 Transcriptomics analysis of developing wild type and val1 mutant Arabidopsis embryos
10.3 -3.3 -3.1 SRP282437 SRR12642127 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
10.2 3.5 2.9 SRP311610 SRR14028736 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.1 -3.2 -3.2 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.0 -3.4 -2.9 SRP026541 SRR925872 Arabidopsis thaliana strain:Col-0 Transcriptome or Gene expression
10.0 3.1 3.3 SRP095347 SRR5120250 Genetic influences on gene expression in Arabidopsis thaliana
10.0 -3.3 -3.1 SRP234996 SRR10603595 Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity
Note: Samples whose contribution is more than 10 are outputted.



The preparation time of this page was 0.7 [sec].