CoexViewer

Coexpression detail for UBP5 and JMJ14
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath UBP5 ubiquitin-specific protease 5 818691 At2g40930 0.72 6.60 5.56 5.86 394.50 4.49 2.23 0.55 2.73 1.83 1.94
ath JMJ14 JUMONJI 14 827788 At4g20400 0.72
Platform:

coex z = 5.5639



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 818691
(z-scored expression)		 827788
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
34.5 -4.9 -7.1 SRP090458 SRR4295856 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
31.4 -5.9 -5.4 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
30.8 -5.5 -5.6 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
25.3 -5.2 -4.8 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
22.4 5.3 4.2 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
20.6 4.5 4.6 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
19.1 -4.3 -4.4 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
18.8 4.5 4.2 SRP266133 SRR11934683 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
17.8 -4.0 -4.4 ERP115370 ERR3333443 Arabidopsis tissue atlas
17.4 -4.4 -4.0 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
17.1 -4.0 -4.3 SRP176451 SRR8404535 Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq]
17.0 -4.0 -4.2 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
15.4 -4.0 -3.8 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
15.1 -3.8 -3.9 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
15.0 -3.5 -4.2 SRP251062 SRR11206305 Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants
14.9 -5.2 -2.9 SRP165731 SRR8054399 The embryonic transcriptome of Arabidopsis thaliana
14.9 -4.0 -3.8 SRP103817 SRR5444475 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
14.0 3.7 3.8 SRP166137 SRR8078926 RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana)
13.9 -3.6 -3.9 SRP039091 SRR1179986 Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource
13.9 -3.9 -3.6 SRP093913 SRR5054306 Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis
13.7 3.3 4.1 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
13.4 -3.7 -3.6 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
13.4 3.5 3.8 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.2 3.6 3.7 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
13.2 3.6 3.7 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
13.2 -3.8 -3.5 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
13.2 3.6 3.7 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.1 -3.6 -3.6 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
12.8 -3.8 -3.4 SRP269252 SRR12110257 Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length
12.6 -3.5 -3.6 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
12.4 3.5 3.5 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.3 -3.1 -4.0 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
12.1 -3.2 -3.8 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
12.0 -3.2 -3.8 SRP214585 SRR9681569 Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins
12.0 3.7 3.2 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.7 3.4 3.5 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
11.7 -3.6 -3.3 SRP372716 SRR18963423 Interpreting gene co-regulation and metabolic profiling in the unique starch metabolism of Arabidopsis dpe2/phs1 mutant reveals insights into control mechanism of the starch granule number
11.7 3.2 3.6 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.6 3.3 3.5 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
11.5 -3.4 -3.4 SRP163443 SRR8060876 RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration
11.5 -3.6 -3.2 SRP073724 SRR3419765 Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
11.3 3.4 3.4 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.2 3.7 3.0 SRP285090 SRR12697065 Differential alteration of plant functions by homologous fungal candidate effectors
11.2 -3.7 -3.0 SRP097877 SRR5205677 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
11.2 -4.4 -2.5 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
10.9 -3.2 -3.4 ERP116123 ERR3414641 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.8 3.2 3.4 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
10.7 -3.1 -3.5 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.6 3.4 3.1 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.6 3.2 3.3 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
10.6 3.1 3.4 SRP311610 SRR14028738 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.5 3.2 3.3 SRP114806 SRR5894659 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
10.5 3.0 3.5 SRP311610 SRR14028736 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.5 -2.9 -3.6 SRP102178 SRR5360867 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
10.5 -3.6 -2.9 SRP076846 SRR3707344 The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status (mRNA-seq)
10.4 -3.2 -3.2 SRP311711 SRR14038167 Transcriptome profiling of etiolated Arabidopsis seedlings 2 days after UV-B treatment
10.3 -3.3 -3.1 SRP148699 SRR7204075 An essential role for Abscisic acid in the regulation of xylem fibre differentiation
10.2 -3.2 -3.2 SRP150217 SRR7289615 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.2 -3.7 -2.7 ERP118109 ERR3624434 Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
10.1 -2.8 -3.6 SRP091641 SRR4426959 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.1 3.1 3.2 SRP277946 SRR12470194 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 -2.5 -4.0 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
10.0 2.8 3.5 SRP311610 SRR14028737 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.0 -3.2 -3.1 ERP116123 ERR3414642 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
Note: Samples whose contribution is more than 10 are outputted.



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