CoexViewer
Coexpression detail for UBP5 and LUG
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | UBP5 | ubiquitin-specific protease 5 | 818691 | At2g40930 | 0.72 | 6.28 | 6.05 | 4.82 | 473.80 | 2.65 | 1.10 | 1.06 | 1.19 | 0.65 | 4.26 | |
| ath | LUG | transcriptional corepressor LEUNIG | 829390 | At4g32551 | 0.72 |
|
coex z = 6.0461 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 818691 (z-scored expression) |
829390 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 41.6 | -5.9 | -7.1 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 31.7 | -5.5 | -5.7 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 29.0 | 5.3 | 5.5 | SRP325022 | SRR14877257 | Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells |
| 28.7 | -5.2 | -5.5 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 26.0 | -4.9 | -5.3 | SRP090458 | SRR4295856 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat] |
| 24.2 | 4.5 | 5.4 | SRP266133 | SRR11934683 | Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions |
| 21.2 | -4.0 | -5.3 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 20.6 | 4.5 | 4.6 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 18.0 | -4.3 | -4.1 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 17.7 | -4.0 | -4.5 | SRP176451 | SRR8404535 | Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq] |
| 16.7 | -4.4 | -3.8 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 16.6 | -4.4 | -3.7 | SRP285380 | SRR12712251 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 15.7 | -3.8 | -4.1 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 15.5 | -3.7 | -4.2 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 15.3 | -4.0 | -3.8 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 15.0 | -3.5 | -4.2 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 14.8 | -3.5 | -4.2 | SRP251062 | SRR11206305 | Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants |
| 14.8 | -5.2 | -2.8 | SRP165731 | SRR8054399 | The embryonic transcriptome of Arabidopsis thaliana |
| 14.4 | 3.5 | 4.1 | SRP277946 | SRR12470184 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.4 | 3.6 | 4.0 | SRP277946 | SRR12470193 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.3 | 3.7 | 3.9 | SRP166137 | SRR8078926 | RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana) |
| 14.2 | -3.9 | -3.6 | SRP277946 | SRR12469806 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.0 | 3.7 | 3.7 | SRP277946 | SRR12470192 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.9 | -3.8 | -3.7 | SRP269252 | SRR12110257 | Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length |
| 13.7 | -3.7 | -3.7 | ERP118109 | ERR3624434 | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
| 13.6 | -3.9 | -3.5 | SRP093913 | SRR5054306 | Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis |
| 13.4 | 3.3 | 4.1 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 13.4 | 3.4 | 3.9 | SRP277946 | SRR12470191 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.2 | -3.6 | -3.6 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 13.1 | 3.6 | 3.6 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 13.1 | -4.0 | -3.3 | SRP103817 | SRR5444475 | Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana |
| 13.1 | 3.6 | 3.6 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 12.9 | -3.6 | -3.6 | SRP372716 | SRR18963423 | Interpreting gene co-regulation and metabolic profiling in the unique starch metabolism of Arabidopsis dpe2/phs1 mutant reveals insights into control mechanism of the starch granule number |
| 12.9 | -3.8 | -3.4 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 12.7 | -3.6 | -3.6 | SRP103817 | SRR5444476 | Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana |
| 12.6 | 3.3 | 3.8 | SRP254177 | SRR11429303 | Time course of brassinolide treatment on Arabidopsis seedlings |
| 12.4 | -3.6 | -3.5 | SRP073724 | SRR3419765 | Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system |
| 12.3 | -3.7 | -3.3 | SRP097877 | SRR5205677 | An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 12.0 | -4.0 | -3.0 | SRP285380 | SRR12712238 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 12.0 | -3.6 | -3.4 | SRP039091 | SRR1179986 | Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource |
| 12.0 | -3.4 | -3.5 | SRP272650 | SRR12272429 | Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity |
| 11.8 | 3.2 | 3.6 | SRP277946 | SRR12470188 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.5 | 3.4 | 3.4 | SRP029957 | SRR988015 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 11.4 | 3.4 | 3.4 | SRP189792 | SRR8800692 | Role of AtMLKLs in response to powdery mildew fungus |
| 11.4 | -3.7 | -3.1 | ERP116123 | ERR3414638 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 11.4 | -3.3 | -3.4 | ERP116123 | ERR3414637 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 11.3 | -3.2 | -3.6 | SRP169564 | SRR8206413 | Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression |
| 11.1 | -3.0 | -3.7 | SRP050945 | SRR1696859 | Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana |
| 11.1 | -3.2 | -3.5 | SRP126872 | SRR6381405 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 11.1 | -3.4 | -3.3 | SRP223015 | SRR10166248 | Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin [mature pollen] |
| 11.0 | 3.1 | 3.5 | SRP311610 | SRR14028738 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 11.0 | 3.2 | 3.4 | SRP351684 | SRR17281133 | Transcriptomic profile of FERONIA mutant treated with Aradopside |
| 11.0 | 3.5 | 3.2 | SRP277946 | SRR12470208 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.9 | -2.7 | -4.0 | ERP118109 | ERR3624432 | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
| 10.9 | -3.4 | -3.2 | ERP118109 | ERR3624435 | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
| 10.9 | 3.2 | 3.4 | SRP365283 | SRR18430906 | Time-series RNAseq analysis following lateral root induction by gravistimulation |
| 10.9 | -4.1 | -2.7 | SRP229078 | SRR10416643 | Global transcriptomic analysis of Arabidopsis thaliana ecotype Columbia-0 subjected to magnesium deficiency |
| 10.8 | -3.1 | -3.5 | SRP150217 | SRR7289599 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.6 | -3.2 | -3.4 | SRP145580 | SRR7160920 | Gene expression responses to ABA and to osmotic stress in the pyl112458 379101112 mutant |
| 10.6 | 3.2 | 3.3 | SRP277946 | SRR12469638 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.6 | -3.1 | -3.5 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.6 | -3.2 | -3.3 | SRP150217 | SRR7289615 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.6 | 3.2 | 3.3 | SRP114806 | SRR5894659 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 10.5 | -3.2 | -3.3 | SRP337622 | SRR15931267 | Hydropriming: the plant endophyte Pseudomonas argenenensis SA190 induces drought tolerance in plants via reprograming aquaporin expression and water use efficiency |
| 10.4 | -3.4 | -3.1 | SRP103817 | SRR5444474 | Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana |
| 10.3 | -3.3 | -3.1 | SRP148699 | SRR7204075 | An essential role for Abscisic acid in the regulation of xylem fibre differentiation |
| 10.2 | -3.3 | -3.1 | SRP281951 | SRR12620957 | RNA-Seq experiment on Arabidopsis seedlings regarding SLIM1 and EIL1 function at low S |
| 10.1 | -2.7 | -3.7 | SRP277946 | SRR12469574 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.1 | 3.4 | 3.0 | SRP282437 | SRR12642156 | Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids |
| 10.0 | 3.0 | 3.4 | SRP266133 | SRR11934487 | Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions |
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