CoexViewer

Coexpression detail for TPR15 and RGD3
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath TPR15 Heat shock protein DnaJ with tetratricopeptide repeat-containing protein 818750 At2g41520 0.67 8.06 6.35 7.59 8.40 4.83 2.72 1.56 4.17 2.23 4.32
ath RGD3 ROOT GROWTH DEFECTIVE 3 824595 At3g54280 0.67
Platform:

coex z = 6.3454



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 818750
(z-scored expression)		 824595
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
57.0 -7.6 -7.5 SRP090458 SRR4295856 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
31.2 -5.9 -5.3 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
30.8 -5.5 -5.6 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
29.0 -5.5 -5.3 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
23.5 4.8 4.9 SRP266133 SRR11934683 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
18.9 -3.9 -4.9 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
18.7 4.9 3.8 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
17.5 -4.4 -4.0 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
17.3 4.2 4.1 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
17.3 -4.1 -4.2 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
17.0 3.9 4.4 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
16.9 3.9 4.4 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
16.3 -4.1 -4.0 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
15.8 -4.5 -3.5 SRP114806 SRR5894632 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
15.4 -4.0 -3.9 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
15.3 -3.8 -4.0 SRP176451 SRR8404535 Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq]
15.2 -3.9 -3.9 ERP116123 ERR3414638 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
14.8 -3.8 -3.9 SRP093913 SRR5054306 Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis
14.4 3.9 3.7 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.2 -3.9 -3.7 SRP103817 SRR5444474 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
14.0 -4.1 -3.4 SRP017386 SRR627679 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
13.9 3.7 3.7 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.8 -3.3 -4.2 ERP116123 ERR3414637 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
13.8 -3.9 -3.6 SRP103817 SRR5444476 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
13.7 -4.0 -3.5 SRP251062 SRR11206305 Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants
13.6 -2.7 -5.1 SRP126574 SRR6369550 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
13.2 -3.7 -3.6 SRP269252 SRR12110257 Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length
13.0 3.6 3.6 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
12.9 -3.5 -3.7 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
12.9 3.7 3.5 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
12.9 3.4 3.8 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.8 -3.6 -3.6 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
12.7 -3.2 -3.9 SRP257291 SRR11568018 Gene expression in Arabidopsis expressing a Hyaloperonospora arabidopsidis effector
12.5 -3.9 -3.2 SRP285090 SRR12697085 Differential alteration of plant functions by homologous fungal candidate effectors
12.4 -3.5 -3.6 SRP155742 SRR8699957 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
12.4 -3.7 -3.4 SRP150771 SRR7357980 RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling
12.4 3.5 3.6 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
12.3 -3.7 -3.4 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
12.1 -3.2 -3.8 SRP026541 SRR925872 Arabidopsis thaliana strain:Col-0 Transcriptome or Gene expression
12.1 -3.4 -3.5 ERP115370 ERR3333436 Arabidopsis tissue atlas
12.0 -3.3 -3.7 SRP272650 SRR12272429 Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity
11.8 -3.5 -3.3 SRP101641 SRR5330614 Chloroplast signalling gates thermotolerance in Arabidopsis
11.8 3.4 3.4 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
11.8 3.4 3.5 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
11.7 -3.8 -3.1 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.7 4.2 2.8 SRP166137 SRR8078926 RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana)
11.6 3.4 3.4 SRP277946 SRR12470194 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.5 -4.1 -2.8 SRP039091 SRR1179987 Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource
11.5 3.8 3.0 SRP311610 SRR14028739 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
11.5 -3.2 -3.6 SRP097877 SRR5205677 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
11.5 -3.1 -3.7 SRP220476 SRR10072739 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
11.5 3.6 3.2 SRP311610 SRR14028738 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
11.4 3.6 3.2 SRP311610 SRR14028736 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
11.4 -2.7 -4.2 ERP116123 ERR3414642 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
11.3 -3.6 -3.1 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.1 3.4 3.3 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.1 -3.7 -3.0 SRP150217 SRR7289570 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.1 2.7 4.2 SRP222258 SRR15122126 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
10.9 -3.5 -3.1 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
10.9 -3.6 -3.0 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
10.8 -3.0 -3.6 SRP103817 SRR5444475 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
10.7 -2.6 -4.1 SRP315390 SRR14275190 The E3 Ubiquitin Ligase AFF1 targets ARF19 to the proteasome
10.5 3.0 3.5 SRP277946 SRR12470201 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 -2.9 -3.6 SRP285119 SRR12698780 Time of day prioritizes the pool of translating mRNAs in response to heat stress
10.4 -3.5 -3.0 SRP063017 SRR2221848 RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes
10.3 3.2 3.2 SRP277946 SRR12470067 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.3 -3.0 -3.5 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
10.3 -3.1 -3.3 SRP272397 SRR12248715 The corepressor of Topless-related 1 (TPR1): Transcript analysis of TPR1-GFP lines
10.3 -3.3 -3.1 SRP281951 SRR12620957 RNA-Seq experiment on Arabidopsis seedlings regarding SLIM1 and EIL1 function at low S
10.2 3.5 3.0 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.2 3.0 3.5 SRP285090 SRR12697055 Differential alteration of plant functions by homologous fungal candidate effectors
10.2 -3.0 -3.4 SRP126872 SRR6381405 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
10.0 -3.4 -2.9 SRP154323 SRR7536202 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
Note: Samples whose contribution is more than 10 are outputted.



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