CoexViewer
Coexpression detail for TFIIB and AT4G35940
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | TFIIB | transcription factor IIB | 818761 | At2g41630 | 0.83 | 7.10 | 7.54 | 4.74 | 108.60 | 2.50 | 3.52 | -0.14 | 1.75 | 1.48 | 2.63 | |
| ath | AT4G35940 | uncharacterized protein | 829749 | At4g35940 | 0.83 |
|
coex z = 7.5426 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 818761 (z-scored expression) |
829749 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 36.8 | -6.3 | -5.8 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 29.5 | -5.6 | -5.3 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 26.3 | -5.4 | -4.9 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 20.8 | 5.1 | 4.1 | SRP112501 | SRR5831044 | Combining chemical and genetic approaches to increase drought resistance in plants |
| 20.2 | -4.6 | -4.4 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 19.2 | -3.7 | -5.2 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 17.7 | 3.6 | 4.9 | ERP123539 | ERR4471740 | EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes |
| 17.4 | -4.2 | -4.2 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 17.2 | -4.3 | -4.0 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 16.1 | -4.1 | -3.9 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 15.7 | 4.0 | 4.0 | SRP070918 | SRR3193434 | Time course transcriptional profiles of the Arabidopsis thaliana response to flg22 infiltration for all combinatorial genotypes of the alleles dde2-2, ein2-1, pad4-1, and sid2-2. |
| 15.4 | 3.7 | 4.2 | SRP103736 | SRR5440841 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 14.1 | -3.5 | -4.0 | SRP101274 | SRR5308791 | During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight. |
| 14.0 | 3.4 | 4.1 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 13.9 | 3.7 | 3.8 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 13.8 | -3.7 | -3.8 | SRP165731 | SRR8054398 | The embryonic transcriptome of Arabidopsis thaliana |
| 13.8 | -3.7 | -3.8 | SRP165731 | SRR8054399 | The embryonic transcriptome of Arabidopsis thaliana |
| 13.3 | -3.8 | -3.5 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 13.2 | -4.1 | -3.2 | SRP050945 | SRR1696859 | Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana |
| 13.0 | 3.9 | 3.4 | SRP277946 | SRR12470184 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.7 | 3.6 | 3.5 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 12.4 | 3.7 | 3.3 | SRP285090 | SRR12697065 | Differential alteration of plant functions by homologous fungal candidate effectors |
| 12.3 | 3.1 | 4.0 | ERP123539 | ERR4471741 | EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes |
| 12.2 | -3.6 | -3.4 | SRP090459 | SRR4296043 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI] |
| 12.2 | -3.9 | -3.1 | SRP169564 | SRR8206413 | Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression |
| 11.9 | -3.5 | -3.4 | SRP126872 | SRR6381398 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 11.8 | -3.2 | -3.7 | SRP100712 | SRR5285649 | Plant development on ISS differes from the development on the ground and is influenced by the genetic background. |
| 11.7 | 3.4 | 3.4 | SRP277946 | SRR12469846 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.7 | 3.4 | 3.4 | SRP277946 | SRR12470193 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.5 | 3.6 | 3.2 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 11.4 | 3.3 | 3.4 | ERP015521 | ERR1406301 | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
| 11.4 | 3.4 | 3.4 | SRP029957 | SRR988015 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 11.3 | -3.1 | -3.6 | SRP361288 | SRR18124820 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 11.2 | -3.3 | -3.4 | SRP150217 | SRR7289585 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 11.1 | -4.0 | -2.8 | SRP251062 | SRR11206305 | Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants |
| 11.1 | 3.3 | 3.4 | SRP311610 | SRR14028737 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 10.9 | 3.2 | 3.4 | SRP277946 | SRR12470188 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.9 | -2.9 | -3.7 | SRP100938 | SRR5304422 | During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight. |
| 10.8 | 3.2 | 3.3 | SRP266133 | SRR11934597 | Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions |
| 10.7 | 3.1 | 3.4 | SRP311610 | SRR14028736 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 10.6 | 3.2 | 3.3 | SRP103736 | SRR5440842 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 10.6 | -3.3 | -3.2 | SRP150217 | SRR7289570 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.6 | -3.0 | -3.5 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.5 | 3.1 | 3.4 | SRP311610 | SRR14028739 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 10.4 | 3.0 | 3.4 | SRP311610 | SRR14028738 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 10.4 | 3.2 | 3.3 | SRP351684 | SRR17281133 | Transcriptomic profile of FERONIA mutant treated with Aradopside |
| 10.3 | -3.3 | -3.2 | SRP073724 | SRR3419765 | Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system |
| 10.3 | -3.5 | -3.0 | SRP039091 | SRR1179987 | Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource |
| 10.3 | -3.4 | -3.1 | SRP039091 | SRR1179986 | Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource |
| 10.3 | 3.3 | 3.1 | SRP254177 | SRR11429303 | Time course of brassinolide treatment on Arabidopsis seedlings |
| 10.3 | -3.4 | -3.0 | SRP073485 | SRR3401801 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 10.2 | -3.6 | -2.8 | SRP258701 | SRR11614791 | Ethylene modulates the dynamics of translation via GCN2 and EIN2 in Arabidopsis under submergence |
| 10.1 | -3.7 | -2.8 | SRP150217 | SRR7289599 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.1 | -3.0 | -3.3 | SRP272650 | SRR12272429 | Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity |
| 10.1 | 3.6 | 2.8 | SRP277946 | SRR12470192 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.1 | 3.4 | 3.0 | SRP277946 | SRR12470059 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.0 | 3.4 | 3.0 | SRP097877 | SRR5205694 | An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
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