CoexViewer
Coexpression detail for MAP1A and AT3G04600
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | MAP1A | methionine aminopeptidase 1A | 819132 | At2g45240 | 0.65 | 7.41 | 8.52 | 4.30 | 155.20 | 2.04 | 2.44 | 2.00 | 3.27 | 1.09 | 6.14 | |
| ath | AT3G04600 | Nucleotidylyl transferase superfamily protein | 819617 | At3g04600 | 0.65 |
|
coex z = 8.5237 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 819132 (z-scored expression) |
819617 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 38.7 | -6.4 | -6.1 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 35.1 | -5.2 | -6.8 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 27.0 | -5.1 | -5.3 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 25.5 | -4.9 | -5.2 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 24.4 | -5.1 | -4.8 | SRP090459 | SRR4296043 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI] |
| 20.7 | -4.3 | -4.8 | SRP285380 | SRR12712238 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 18.8 | -3.7 | -5.1 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 18.4 | -4.4 | -4.1 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 17.7 | 4.2 | 4.2 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 17.3 | -4.2 | -4.1 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 16.3 | -4.1 | -4.0 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 16.2 | 4.2 | 3.9 | SRP103736 | SRR5440841 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 15.5 | 3.7 | 4.2 | SRP266133 | SRR11934683 | Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions |
| 15.2 | -3.6 | -4.2 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 14.6 | 3.7 | 4.0 | SRP277946 | SRR12470192 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.0 | 3.7 | 3.8 | SRP277946 | SRR12470184 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.0 | -3.6 | -3.9 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 13.1 | -3.5 | -3.8 | SRP039091 | SRR1179986 | Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource |
| 12.9 | -3.6 | -3.6 | SRP150217 | SRR7289599 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 12.8 | -3.7 | -3.4 | SRP050945 | SRR1696859 | Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana |
| 12.8 | 3.5 | 3.6 | SRP371011 | SRR18808229 | Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation |
| 12.8 | -3.6 | -3.6 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 12.7 | 3.6 | 3.5 | SRP351684 | SRR17281133 | Transcriptomic profile of FERONIA mutant treated with Aradopside |
| 12.7 | 3.7 | 3.4 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 12.5 | 3.6 | 3.5 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 12.5 | -3.4 | -3.7 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 12.4 | 3.5 | 3.6 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 12.3 | 3.9 | 3.2 | SRP254177 | SRR11429303 | Time course of brassinolide treatment on Arabidopsis seedlings |
| 12.3 | -3.5 | -3.6 | SRP169564 | SRR8206413 | Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression |
| 12.2 | -3.4 | -3.6 | SRP251062 | SRR11206305 | Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants |
| 11.7 | -3.5 | -3.4 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 11.5 | 3.6 | 3.2 | SRP325022 | SRR14877257 | Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells |
| 11.5 | -3.1 | -3.7 | SRP073485 | SRR3401801 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 11.4 | -3.0 | -3.8 | SRP150217 | SRR7289585 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 11.4 | -3.5 | -3.3 | SRP163443 | SRR8060876 | RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration |
| 11.3 | 3.5 | 3.3 | SRP365283 | SRR18430906 | Time-series RNAseq analysis following lateral root induction by gravistimulation |
| 11.2 | 3.5 | 3.3 | SRP277946 | SRR12470208 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.2 | -3.2 | -3.5 | SRP148699 | SRR7204075 | An essential role for Abscisic acid in the regulation of xylem fibre differentiation |
| 11.2 | -3.4 | -3.2 | SRP162520 | SRR7899136 | Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0), at 10min to 12h after detachment Col-0, coi1-2 and sdg8-2 seedlings. |
| 11.1 | 3.1 | 3.6 | SRP277946 | SRR12470193 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.0 | 3.0 | 3.6 | SRP277946 | SRR12470191 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.0 | -3.7 | -3.0 | SRP126872 | SRR6381398 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 10.9 | -3.3 | -3.3 | SRP297585 | SRR13239294 | mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos |
| 10.9 | -2.9 | -3.7 | SRP102178 | SRR5360867 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 10.8 | -2.9 | -3.7 | SRP126574 | SRR6369550 | Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis |
| 10.7 | -3.2 | -3.4 | SRP035269 | SRR1105593 | RNASeq of Developing Arabidopsis Seeds Producing Hydroxy-Fatty Acids |
| 10.7 | 3.1 | 3.4 | SRP285090 | SRR12697055 | Differential alteration of plant functions by homologous fungal candidate effectors |
| 10.7 | -3.0 | -3.6 | SRP302122 | SRR13450896 | The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis [RNA-seq] |
| 10.5 | -3.0 | -3.5 | SRP126872 | SRR6381404 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 10.4 | -2.7 | -3.9 | SRP097877 | SRR5205613 | An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 10.3 | -2.9 | -3.6 | SRP285119 | SRR12698780 | Time of day prioritizes the pool of translating mRNAs in response to heat stress |
| 10.2 | 3.3 | 3.1 | SRP155742 | SRR7620862 | Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors |
| 10.1 | 2.9 | 3.5 | SRP277946 | SRR12470067 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.0 | -2.8 | -3.6 | SRP155742 | SRR8699957 | Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors |
| 10.0 | -3.3 | -3.0 | SRP091641 | SRR4426344 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
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