CoexViewer
Coexpression detail for AT2G45250 and CHY1
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|
| ath | AT2G45250 | integral membrane hemolysin-III-like protein | 819133 | At2g45250 | 0.65 | 6.49 | 6.73 | 2.67 | |
| ath | CHY1 | beta-hydroxyisobutyryl-CoA hydrolase 1 | 836724 | At5g65940 | 0.65 |
|
coex z = 6.7279 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 819133 (z-scored expression) |
836724 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 41.6 | -6.8 | -6.1 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 27.4 | -5.3 | -5.2 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 26.1 | -4.9 | -5.4 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 22.0 | -4.3 | -5.2 | SRP090459 | SRR4296043 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI] |
| 19.6 | -4.4 | -4.5 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 18.9 | -4.3 | -4.4 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 18.5 | 4.3 | 4.3 | SRP103736 | SRR5440841 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 18.4 | -4.4 | -4.2 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 17.9 | -4.1 | -4.3 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 16.9 | -3.8 | -4.4 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 16.1 | -4.7 | -3.4 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 15.6 | -4.8 | -3.3 | SRP285380 | SRR12712251 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 15.2 | -2.9 | -5.2 | SRP155742 | SRR8699957 | Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors |
| 15.2 | 4.0 | 3.7 | SRP277946 | SRR12470193 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.8 | -3.8 | -3.9 | SRP272650 | SRR12272429 | Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity |
| 14.0 | 4.0 | 3.5 | SRP254177 | SRR11429303 | Time course of brassinolide treatment on Arabidopsis seedlings |
| 14.0 | -3.6 | -3.9 | SRP286047 | SRR12762107 | The impact of the genes BBX32 and HY5 on the high light - responsive transcriptome of Arabidopsis thaliana |
| 13.6 | -3.8 | -3.6 | SRP169564 | SRR8206413 | Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression |
| 13.5 | 3.8 | 3.6 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 13.0 | 3.2 | 4.1 | SRP277946 | SRR12470184 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.0 | 3.6 | 3.6 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 12.8 | -3.3 | -3.8 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 12.7 | 3.4 | 3.7 | SRP277946 | SRR12470192 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.4 | -3.6 | -3.5 | SRP163443 | SRR8060876 | RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration |
| 12.4 | -3.4 | -3.6 | SRP073724 | SRR3419765 | Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system |
| 12.3 | -4.8 | -2.6 | SRP325022 | SRR14877121 | Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells |
| 12.3 | -3.8 | -3.2 | SRP102178 | SRR5360867 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 12.2 | -3.7 | -3.3 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 12.0 | -3.5 | -3.4 | SRP073485 | SRR3401786 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 12.0 | -3.4 | -3.6 | SRP150217 | SRR7289570 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 11.9 | -2.6 | -4.5 | ERP116123 | ERR3414642 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 11.8 | 3.5 | 3.4 | SRP029957 | SRR988015 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 11.6 | -3.9 | -3.0 | SRP090459 | SRR4296060 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI] |
| 11.5 | 3.4 | 3.4 | SRP311610 | SRR14028737 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 11.5 | 3.5 | 3.3 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 11.5 | 3.6 | 3.2 | SRP277946 | SRR12470191 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.3 | 3.6 | 3.2 | SRP311610 | SRR14028738 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 11.3 | -3.1 | -3.7 | SRP337622 | SRR15931267 | Hydropriming: the plant endophyte Pseudomonas argenenensis SA190 induces drought tolerance in plants via reprograming aquaporin expression and water use efficiency |
| 11.3 | -3.6 | -3.2 | SRP251062 | SRR11206305 | Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants |
| 11.3 | -2.9 | -3.9 | SRP173260 | SRR8310903 | Functional relationship of GUN1 and FUG1 in plastid proteostasis |
| 11.2 | -2.9 | -3.9 | SRP103817 | SRR5444419 | Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana |
| 11.0 | 3.7 | 3.0 | SRP311610 | SRR14028739 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 11.0 | 3.5 | 3.1 | SRP311610 | SRR14028736 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 10.8 | -3.3 | -3.3 | SRP150217 | SRR7289599 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.7 | -2.2 | -4.9 | SRP285380 | SRR12712238 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 10.7 | 3.1 | 3.5 | SRP351684 | SRR17281133 | Transcriptomic profile of FERONIA mutant treated with Aradopside |
| 10.6 | 3.2 | 3.3 | SRP365283 | SRR18430906 | Time-series RNAseq analysis following lateral root induction by gravistimulation |
| 10.6 | -3.8 | -2.8 | SRP114806 | SRR5894775 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 10.5 | -3.3 | -3.2 | SRP148699 | SRR7204075 | An essential role for Abscisic acid in the regulation of xylem fibre differentiation |
| 10.4 | -3.4 | -3.1 | SRP297920 | SRR13253061 | Transcript analysis under phosphate and iron deprivation in 7 day old Arabidopsis thaliana seedlings |
| 10.4 | -3.8 | -2.8 | SRP334993 | SRR15679198 | Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes |
| 10.3 | -3.2 | -3.2 | SRP365415 | SRR18441284 | Transcriptome profiling of Arabidopsis roots upon lateral root induction in WT and TOR knock down [dataset1] |
| 10.3 | 2.9 | 3.5 | SRP277946 | SRR12470208 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.2 | 3.3 | 3.1 | SRP097877 | SRR5205694 | An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 10.0 | -3.6 | -2.8 | SRP091641 | SRR4426941 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
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