CoexViewer

Coexpression detail for AT3G10080 and SHR
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT3G10080 RmlC-like cupins superfamily protein 820169 At3g10080 0.42 4.23 4.28 3.04 858.00 1.93 0.42 3.78 1.63 1.33 0.52
ath SHR GRAS family transcription factor 829919 At4g37650 0.42
Platform:

coex z = 4.2836



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 820169
(z-scored expression)		 829919
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
38.7 7.0 5.5 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
34.2 -5.4 -6.3 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
22.3 -4.4 -5.1 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
17.8 3.2 5.5 ERP123539 ERR4471742 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
17.0 -2.4 -7.2 ERP116123 ERR3414875 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
16.6 -4.3 -3.9 SRP324081 SRR14813614 ARATH-IN-OUT
16.6 -4.3 -3.9 SRP362867 SRR18254736 Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses
15.5 -4.4 -3.5 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
15.3 -4.7 -3.3 SRP073485 SRR3401786 Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation
15.2 -3.5 -4.3 SRP070918 SRR3193338 Time course transcriptional profiles of the Arabidopsis thaliana response to flg22 infiltration for all combinatorial genotypes of the alleles dde2-2, ein2-1, pad4-1, and sid2-2.
15.1 -2.1 -7.2 ERP116123 ERR3414876 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
15.0 -3.7 -4.0 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
14.8 -3.9 -3.8 SRP125388 SRR6312356 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
13.9 -3.0 -4.6 ERP115370 ERR3333441 Arabidopsis tissue atlas
13.6 -3.9 -3.5 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
13.5 -3.8 -3.6 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
13.1 -4.0 -3.3 SRP109649 SRR5712408 Transcriptome profiling of mutants of CALMODULIN-LIKE (CML) family genes and CALMODULIN-BINDING PROTEIN 60 (CBP60) family genes in response to Pseudomonas syringae pv maculicola ES4326
12.9 -3.7 -3.5 SRP101641 SRR5330623 Chloroplast signalling gates thermotolerance in Arabidopsis
12.8 -4.1 -3.1 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
12.3 -3.7 -3.3 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
12.1 3.4 3.6 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
12.0 -2.5 -4.9 SRP266133 SRR11934491 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
11.8 3.4 3.5 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
11.7 4.2 2.8 SRP021196 SRR1610503 RNA-Seq of single cells from the Arabidopsis root
11.6 -3.6 -3.2 SRP104760 SRR5467210 Interactions between effector-triggered immunity (ETI) and pattern-triggered immunity (PTI) in an Arabidopsis dde2 ein2 pad4 sid2 mutant
11.5 -3.1 -3.7 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
11.4 -3.6 -3.1 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
11.0 3.5 3.1 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
10.8 -3.3 -3.2 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
10.6 -3.3 -3.2 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.6 -3.3 -3.2 SRP018034 SRR2079784 Time-course transcriptome of wild-type Arabidopsis leaf
10.5 3.5 3.0 SRP234996 SRR10603563 Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity
10.4 -3.4 -3.0 SRP159259 SRR7774155 Diel and circadian gating of Arabidopsis thermotolerance and transcriptional response to heat stress.
10.2 -3.3 -3.1 SRP056601 SRR1947749 Arabidopsis thaliana Transcriptome or Gene expression
10.2 -3.3 -3.1 SRP057258 SRR1976486 BCAA catabolic mutants in prolonged darkness
10.1 -3.7 -2.7 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
10.1 -6.6 -1.5 ERP116123 ERR3414902 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
Note: Samples whose contribution is more than 10 are outputted.



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