CoexViewer

Coexpression detail for AT3G10190 and HMGB3
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT3G10190 Calcium-binding EF-hand family protein 820181 At3g10190 0.38 3.11 2.30 3.07 2223.70 1.73 1.13 1.12 0.78 1.45 1.02
ath HMGB3 high mobility group B3 838659 At1g20696 0.38
Platform:

coex z = 2.3048



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 820181
(z-scored expression)		 838659
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
26.0 -5.5 -4.8 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
21.6 -3.9 -5.6 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
21.6 -6.1 -3.6 SRP345854 SRR16934651 Phytochrome B regulates reactive oxygen signaling during stress in plants.
19.9 -4.0 -5.0 ERP115370 ERR3333443 Arabidopsis tissue atlas
15.8 -3.6 -4.4 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
15.4 -3.1 -4.9 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
15.3 -4.2 -3.6 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
15.2 -4.4 -3.5 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
15.0 -3.9 -3.9 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
13.2 3.3 4.0 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
13.2 -3.0 -4.3 SRP126872 SRR6381398 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
12.8 3.1 4.1 SRP277946 SRR12469638 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.8 3.9 3.3 SRP277946 SRR12469766 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.7 -3.6 -3.3 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
11.6 3.2 3.7 SRP103736 SRR5440841 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
11.5 -2.5 -4.5 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
11.4 -3.7 -3.1 SRP090457 SRR4295748 RNA-seq of Arabidopsis thaliana seedlings treated with MeJA or flg22 under full and low phosphate conditions
11.3 3.0 3.8 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
11.2 -3.7 -3.0 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.1 -3.1 -3.6 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
11.1 -3.7 -3.0 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.7 -3.1 -3.5 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
10.7 -3.0 -3.5 SRP214585 SRR9681537 Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins
10.6 3.0 3.5 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
10.6 3.3 3.2 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
10.5 -3.6 -2.9 SRP091641 SRR4426346 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.4 -5.0 -2.1 SRP100064 SRR5262991 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
10.1 -3.0 -3.4 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
10.0 -3.9 -2.5 ERP013651 ERR1194827 Transcriptional response of Arabidopsis thaliana in systemic acquired resistance: critical roles for pipecolic acid and salicylic acid
Note: Samples whose contribution is more than 10 are outputted.



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