CoexViewer

Coexpression detail for AT3G16840 and AT3G01160
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT3G16840 P-loop containing nucleoside triphosphate hydrolases superfamily protein 820937 At3g16840 0.79 12.62 13.23 8.59 42.20 3.30 3.71 2.22 3.43 2.96 8.65
ath AT3G01160 pre-rRNA-processing ESF1-like protein 820504 At3g01160 0.79
Platform:

coex z = 13.2294



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 820937
(z-scored expression)		 820504
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
29.9 -5.5 -5.4 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
28.6 -5.5 -5.2 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
25.9 -5.3 -4.8 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
23.8 -4.1 -5.8 SRP114806 SRR5894632 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
20.1 -5.6 -3.6 SRP100712 SRR5285649 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
18.3 -4.5 -4.0 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
16.9 -4.3 -4.0 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
16.8 4.2 4.0 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
16.6 -5.3 -3.1 SRP101274 SRR5308791 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
16.4 -3.7 -4.4 SRP257291 SRR11568018 Gene expression in Arabidopsis expressing a Hyaloperonospora arabidopsidis effector
15.2 -4.2 -3.6 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
14.8 4.0 3.7 SRP222258 SRR15122126 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
14.8 4.1 3.6 SRP103736 SRR5440841 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
14.6 3.6 4.0 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
14.2 -3.0 -4.7 SRP187381 SRR8661968 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
14.2 -4.0 -3.5 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
14.1 -4.0 -3.5 SRP165731 SRR8054399 The embryonic transcriptome of Arabidopsis thaliana
14.0 -4.4 -3.2 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
13.7 -3.4 -4.0 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
13.6 -3.5 -3.9 SRP187381 SRR8661972 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
13.4 3.8 3.5 SRP266133 SRR11934683 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
13.3 -3.8 -3.5 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
13.1 -3.5 -3.7 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
13.1 -3.4 -3.9 SRP251062 SRR11206305 Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants
12.8 3.6 3.5 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
12.8 -2.8 -4.5 ERP115370 ERR3333443 Arabidopsis tissue atlas
12.5 -3.4 -3.7 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
12.5 -3.2 -3.8 SRP073485 SRR3401801 Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation
12.3 3.9 3.2 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.1 3.5 3.4 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
12.0 -3.5 -3.4 SRP176451 SRR8404535 Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq]
11.9 3.5 3.4 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
11.9 -3.5 -3.4 SRP050945 SRR1696859 Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana
11.8 -3.6 -3.3 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
11.7 3.4 3.4 ERP015521 ERR1406301 Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
11.6 3.3 3.5 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
11.6 -3.8 -3.0 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
11.5 -3.5 -3.3 SRP101641 SRR5330614 Chloroplast signalling gates thermotolerance in Arabidopsis
11.4 3.4 3.3 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.3 3.2 3.5 SRP097877 SRR5205694 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
11.2 -3.9 -2.9 SRP100712 SRR5285666 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
11.1 3.5 3.2 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.1 -2.7 -4.2 SRP214585 SRR9681199 Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins
11.0 3.3 3.4 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
11.0 -3.3 -3.3 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
10.9 3.2 3.4 SRP155742 SRR7620901 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
10.9 3.6 3.0 SRP311610 SRR14028739 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.9 3.4 3.2 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.9 3.6 3.0 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.9 -3.5 -3.1 SRP187381 SRR8661970 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
10.7 -3.8 -2.8 SRP103817 SRR5444473 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
10.7 -3.1 -3.4 SRP214585 SRR9681203 Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins
10.6 3.6 3.0 SRP311610 SRR14028737 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.5 -3.0 -3.5 SRP091641 SRR4426959 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.5 -3.4 -3.1 SRP073724 SRR3419765 Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
10.5 3.3 3.1 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 -3.3 -3.2 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
10.4 3.3 3.1 SRP311610 SRR14028738 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.2 3.4 3.0 SRP311610 SRR14028736 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.2 -3.0 -3.4 SRP090458 SRR4295856 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
10.2 3.1 3.3 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
Note: Samples whose contribution is more than 10 are outputted.



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