CoexViewer

Coexpression detail for AT3G16840 and CIP4.1
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-e.c1-0
ath AT3G16840 P-loop containing nucleoside triphosphate hydrolases superfamily protein 820937 At3g16840 0.79 7.90 8.42 6.85
ath CIP4.1 COP1-interacting protein 4.1 827980 At4g00930 0.79
Platform:

coex z = 8.4239



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 820937
(z-scored expression)		 827980
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
33.0 -5.5 -6.0 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
32.1 -3.9 -8.2 SRP100712 SRR5285650 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
28.1 -5.3 -5.2 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
27.4 -3.8 -7.2 SRP103817 SRR5444473 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
27.3 -3.7 -7.4 SRP101274 SRR5308792 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
24.9 -5.5 -4.5 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
22.0 -5.6 -4.0 SRP100712 SRR5285649 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
19.2 -3.9 -4.9 SRP100712 SRR5285666 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
19.0 -3.0 -6.4 SRP090458 SRR4295856 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
18.8 -5.3 -3.5 SRP101274 SRR5308791 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
18.0 4.2 4.3 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
17.4 -4.2 -4.2 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
17.0 -4.4 -3.9 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
16.2 -3.7 -4.4 SRP101274 SRR5308808 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
15.9 -3.7 -4.2 SRP257291 SRR11568018 Gene expression in Arabidopsis expressing a Hyaloperonospora arabidopsidis effector
15.9 -4.5 -3.5 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
15.8 4.0 4.0 SRP222258 SRR15122126 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
15.3 -4.0 -3.8 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
14.6 -3.8 -3.8 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
14.2 -4.3 -3.3 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
14.2 -4.0 -3.5 SRP165731 SRR8054399 The embryonic transcriptome of Arabidopsis thaliana
14.1 -2.8 -5.1 SRP285119 SRR12698763 Time of day prioritizes the pool of translating mRNAs in response to heat stress
13.9 -3.1 -4.4 ERP116123 ERR3414637 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
13.8 -3.5 -3.9 SRP101641 SRR5330614 Chloroplast signalling gates thermotolerance in Arabidopsis
13.6 -3.8 -3.6 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
13.2 -3.5 -3.7 SRP176451 SRR8404535 Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq]
12.8 3.6 3.5 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
12.7 -3.4 -3.7 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
12.7 -3.7 -3.4 SRP155742 SRR8699957 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
12.4 -3.6 -3.5 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
12.2 3.5 3.4 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
12.1 -3.5 -3.4 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
12.0 3.3 3.6 SRP166137 SRR8078926 RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana)
12.0 -3.5 -3.4 SRP187381 SRR8661970 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
11.8 3.9 3.1 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.8 -3.5 -3.4 SRP050945 SRR1696859 Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana
11.8 -3.3 -3.5 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
11.8 3.3 3.5 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
11.8 3.5 3.4 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.6 -3.4 -3.4 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.5 3.4 3.4 ERP015521 ERR1406301 Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
11.4 3.8 3.0 SRP266133 SRR11934683 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
11.4 -3.4 -3.3 SRP073724 SRR3419765 Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
11.3 -3.3 -3.4 SRP237791 SRR10704382 Ustilago maydis effector Jsi1 interacts with Topless corepressor, hijacking plant JA/ET signaling
11.2 4.1 2.7 SRP103736 SRR5440841 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
11.1 -2.6 -4.2 SRP285119 SRR12698780 Time of day prioritizes the pool of translating mRNAs in response to heat stress
11.0 -2.8 -3.9 ERP115370 ERR3333443 Arabidopsis tissue atlas
11.0 3.6 3.0 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.8 -1.9 -5.8 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
10.8 3.5 3.1 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
10.6 -3.0 -3.5 SRP091641 SRR4426346 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.4 -3.0 -3.5 SRP165731 SRR8054398 The embryonic transcriptome of Arabidopsis thaliana
10.2 -3.1 -3.3 ERP109739 ERR2683774 Transcriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway
10.1 3.6 2.8 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
10.1 3.3 3.0 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.0 3.4 2.9 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
Note: Samples whose contribution is more than 10 are outputted.



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