CoexViewer
Coexpression detail for MSR1 and AT4G28330
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | MSR1 | O-fucosyltransferase family protein | 821672 | At3g21190 | 0.65 | 4.48 | 4.40 | 3.34 | 5857.90 | 0.27 | 0.34 | 0.71 | 2.24 | 0.80 | 2.40 | |
| ath | AT4G28330 | pyrroline-5-carboxylate reductase | 828948 | At4g28330 | 0.65 |
|
coex z = 4.4 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 821672 (z-scored expression) |
828948 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 22.0 | -3.8 | -5.8 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 20.2 | -3.2 | -6.4 | SRP155742 | SRR8699957 | Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors |
| 18.8 | -5.6 | -3.4 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 17.1 | -5.0 | -3.4 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 16.1 | -4.1 | -3.9 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 15.6 | -3.8 | -4.1 | ERP013651 | ERR1194838 | Transcriptional response of Arabidopsis thaliana in systemic acquired resistance: critical roles for pipecolic acid and salicylic acid |
| 14.4 | -2.7 | -5.3 | SRP050945 | SRR1696859 | Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana |
| 14.2 | -3.0 | -4.7 | SRP083970 | SRR4115297 | The Cytoplasmic mRNA Decay Landscape of Arabidopsis Seedlings [RNA-seq] |
| 14.0 | 2.7 | 5.3 | ERP123539 | ERR4471740 | EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes |
| 13.5 | -3.0 | -4.5 | SRP285902 | SRR12747511 | Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis |
| 13.4 | -3.8 | -3.5 | SRP267137 | SRR12005766 | ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks |
| 13.4 | -3.7 | -3.6 | SRP100938 | SRR5304647 | During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight. |
| 13.3 | -3.0 | -4.5 | SRP100064 | SRR5263029 | Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary? |
| 13.3 | -3.6 | -3.6 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 12.9 | -3.0 | -4.3 | SRP220476 | SRR10072754 | Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants |
| 12.2 | -3.2 | -3.8 | SRP101641 | SRR5330623 | Chloroplast signalling gates thermotolerance in Arabidopsis |
| 12.0 | -1.8 | -6.6 | SRP158306 | SRR7695190 | Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq] |
| 11.9 | -4.0 | -3.0 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 11.8 | -3.1 | -3.8 | SRP145580 | SRR7160920 | Gene expression responses to ABA and to osmotic stress in the pyl112458 379101112 mutant |
| 11.6 | 2.7 | 4.3 | ERP123539 | ERR4471742 | EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes |
| 11.0 | -2.5 | -4.4 | SRP091641 | SRR4426632 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.9 | -3.2 | -3.4 | SRP102178 | SRR5360867 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 10.9 | -1.6 | -6.6 | SRP158306 | SRR7694777 | Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq] |
| 10.7 | -1.6 | -6.6 | SRP158306 | SRR7695070 | Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq] |
| 10.5 | -2.2 | -4.7 | SRP007484 | SRR309180 | Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions |
| 10.4 | -2.4 | -4.3 | SRP220476 | SRR10072747 | Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants |
| 10.4 | 3.4 | 3.1 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 10.2 | -2.5 | -4.1 | SRP119870 | SRR6166409 | Transcriptomic characterization of spl7 and Col-0 ecotypes of Arabidopsis reveals new aspects of Fe-Cu crosstalk |
| 10.1 | -2.5 | -4.1 | SRP125388 | SRR6312356 | Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration |
| 10.1 | -2.6 | -3.9 | SRP251507 | SRR11235152 | Transcriptome and translatome profiling of Arabidopsis upf1-3 pad4 mutant |
| 10.0 | -3.7 | -2.7 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
The preparation time of this page was 0.7 [sec].
