CoexViewer
Coexpression detail for MSR1 and GH9B5
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | MSR1 | O-fucosyltransferase family protein | 821672 | At3g21190 | 0.65 | 5.79 | 5.30 | 4.72 | 214.90 | 0.87 | 2.41 | 1.57 | 2.49 | 0.10 | 5.84 | |
| ath | GH9B5 | glycosyl hydrolase 9B5 | 838583 | At1g19940 | 0.65 |
|
coex z = 5.2979 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 821672 (z-scored expression) |
838583 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 27.2 | -5.2 | -5.2 | SRP073485 | SRR3401786 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 21.6 | -5.6 | -3.9 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 19.9 | -3.8 | -5.2 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 18.5 | -5.0 | -3.7 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 18.0 | -4.1 | -4.4 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 16.2 | -3.5 | -4.6 | SRP114806 | SRR5894632 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 14.9 | -2.9 | -5.2 | SRP150217 | SRR7289615 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 13.7 | -3.7 | -3.7 | SRP091641 | SRR4426582 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 13.7 | -2.9 | -4.8 | SRP187062 | SRR8645799 | Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis |
| 13.1 | -3.6 | -3.7 | SRP091641 | SRR4426789 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 12.8 | -3.1 | -4.1 | SRP187156 | SRR8648403 | Genome-wide profiling of Arabidopsis thaliana Col-0 and ein2/jar1 host responses to Macrophomina phaseolina infection |
| 12.6 | -3.7 | -3.4 | SRP103736 | SRR5440882 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 12.5 | -2.1 | -6.0 | SRP258701 | SRR11614791 | Ethylene modulates the dynamics of translation via GCN2 and EIN2 in Arabidopsis under submergence |
| 12.3 | -3.5 | -3.5 | SRP126574 | SRR6369550 | Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis |
| 12.2 | -3.6 | -3.3 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 12.1 | -2.2 | -5.6 | SRP199288 | SRR9113157 | In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size |
| 12.1 | -2.2 | -5.6 | SRP132865 | SRR6726417 | Molecular basis of flowering under natural long-day conditions in Arabidopsis |
| 11.7 | -3.7 | -3.1 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 11.6 | 4.2 | 2.8 | SRP277946 | SRR12470184 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.5 | -2.2 | -5.2 | SRP150217 | SRR7289547 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.7 | -2.6 | -4.2 | SRP100712 | SRR5285678 | Plant development on ISS differes from the development on the ground and is influenced by the genetic background. |
| 10.7 | -2.9 | -3.7 | SRP334993 | SRR15679190 | Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes |
| 10.7 | -3.6 | -2.9 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 10.5 | -2.9 | -3.7 | SRP091641 | SRR4426511 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.5 | -2.9 | -3.7 | SRP126872 | SRR6381404 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 10.2 | -2.0 | -5.0 | SRP044776 | SRR1523897 | High-resolution tissue-specific analysis of the Arabidopsis transcriptome in response to shade |
| 10.1 | -2.6 | -3.9 | SRP102178 | SRR5360849 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
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