CoexViewer
Coexpression detail for ATM and AT4G38350
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | ATM | Serine/Threonine-kinase ATM-like protein | 823975 | At3g48190 | 0.63 | 8.54 | 8.06 | 6.70 | 4.50 | 1.72 | 2.75 | 2.62 | 3.23 | 0.28 | 7.56 | |
| ath | AT4G38350 | Patched family protein | 829992 | At4g38350 | 0.63 |
|
coex z = 8.0581 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 823975 (z-scored expression) |
829992 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 40.3 | -6.2 | -6.5 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 33.9 | -5.7 | -5.9 | SRP285380 | SRR12712251 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 29.4 | -5.3 | -5.5 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 28.2 | -5.2 | -5.4 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 20.2 | -4.8 | -4.2 | SRP090458 | SRR4295856 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat] |
| 19.7 | -4.1 | -4.8 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 17.6 | -3.9 | -4.6 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 17.1 | -4.4 | -3.9 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 16.6 | -4.2 | -4.0 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 16.1 | -3.3 | -4.9 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 15.7 | 3.5 | 4.5 | SRP254177 | SRR11429303 | Time course of brassinolide treatment on Arabidopsis seedlings |
| 15.6 | -3.9 | -4.0 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 15.2 | 3.5 | 4.4 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 15.0 | 3.7 | 4.0 | SRP277946 | SRR12470193 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.9 | -3.9 | -3.8 | SRP297585 | SRR13239294 | mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos |
| 14.9 | -4.0 | -3.8 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 14.6 | -3.9 | -3.8 | SRP093913 | SRR5054306 | Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis |
| 14.5 | -4.1 | -3.6 | SRP220476 | SRR10072740 | Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants |
| 13.9 | -3.7 | -3.7 | SRP269252 | SRR12110257 | Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length |
| 13.8 | -3.5 | -4.0 | ERP116123 | ERR3414638 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 13.8 | 3.4 | 4.0 | SRP277946 | SRR12470192 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.5 | -3.6 | -3.7 | SRP272650 | SRR12272429 | Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity |
| 13.5 | -4.2 | -3.2 | SRP155742 | SRR8699957 | Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors |
| 13.3 | -3.7 | -3.6 | ERP116123 | ERR3414641 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 13.3 | -3.6 | -3.7 | SRP282437 | SRR12642226 | Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids |
| 13.2 | -3.9 | -3.4 | SRP220476 | SRR10072738 | Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants |
| 13.1 | 3.4 | 3.9 | SRP277946 | SRR12470191 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.8 | -3.0 | -4.3 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 12.8 | 3.3 | 3.9 | SRP277946 | SRR12470188 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.7 | -3.6 | -3.5 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 12.6 | 3.5 | 3.6 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 12.5 | -3.9 | -3.2 | ERP116123 | ERR3414642 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 12.5 | -3.7 | -3.4 | SRP065807 | SRR2927349 | Transcriptomics analysis of developing wild type and val1 mutant Arabidopsis embryos |
| 12.4 | -3.3 | -3.7 | SRP220476 | SRR10072739 | Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants |
| 12.2 | -3.4 | -3.6 | SRP073724 | SRR3419765 | Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system |
| 12.1 | 3.3 | 3.7 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 12.1 | 3.8 | 3.2 | SRP189792 | SRR8800692 | Role of AtMLKLs in response to powdery mildew fungus |
| 12.1 | 3.5 | 3.5 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 11.9 | -3.6 | -3.3 | ERP116123 | ERR3414637 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 11.5 | 3.6 | 3.2 | SRP277946 | SRR12470200 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.5 | 3.3 | 3.5 | SRP325022 | SRR14877257 | Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells |
| 11.3 | 3.3 | 3.4 | SRP029957 | SRR988015 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 11.3 | 2.7 | 4.2 | SRP277946 | SRR12470184 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.0 | -3.2 | -3.4 | SRP187381 | SRR8662350 | Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L. |
| 11.0 | -3.1 | -3.5 | SRP277946 | SRR12469574 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.8 | -2.8 | -3.8 | SRP126872 | SRR6381404 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 10.7 | -3.3 | -3.2 | SRP097877 | SRR5205677 | An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 10.7 | 3.1 | 3.4 | SRP277946 | SRR12470208 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.5 | 3.0 | 3.5 | SRP277946 | SRR12470194 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.5 | -3.2 | -3.2 | SRP126574 | SRR6369550 | Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis |
| 10.4 | 3.4 | 3.0 | SRP090913 | SRR8185442 | WallOmics |
| 10.4 | -2.6 | -4.0 | SRP073485 | SRR3401786 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 10.3 | 2.9 | 3.6 | SRP166137 | SRR8078926 | RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana) |
| 10.3 | -3.4 | -3.0 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.2 | 3.3 | 3.1 | SRP365283 | SRR18430906 | Time-series RNAseq analysis following lateral root induction by gravistimulation |
| 10.2 | -3.0 | -3.4 | SRP150217 | SRR7289570 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.1 | -3.3 | -3.0 | SRP076846 | SRR3707344 | The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status (mRNA-seq) |
| 10.1 | -3.3 | -3.1 | ERP115370 | ERR3333436 | Arabidopsis tissue atlas |
| 10.1 | -2.8 | -3.6 | SRP102178 | SRR5360867 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 10.0 | -3.5 | -2.9 | SRP137763 | SRR6950045 | The SOG1 transcriptional activator and the MYB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [RNA-seq t vs t0] |
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