CoexViewer
Coexpression detail for DMS3 and AT1G03270
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | DMS3 | defective in meristem silencing 3 | 824086 | At3g49250 | 0.36 | 5.22 | 5.21 | 3.81 | 11479.60 | 2.63 | 1.97 | 0.81 | 1.58 | 1.31 | 1.58 | |
| ath | AT1G03270 | CBS domain protein with a domain protein (DUF21) | 838595 | At1g03270 | 0.36 |
|
coex z = 5.2147 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 824086 (z-scored expression) |
838595 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 42.3 | -6.2 | -6.8 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 21.5 | -6.1 | -3.5 | SRP091641 | SRR4426353 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 20.0 | -3.7 | -5.4 | SRP073485 | SRR3401786 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 18.9 | -6.1 | -3.1 | SRP155742 | SRR8699976 | Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors |
| 18.8 | -4.7 | -4.0 | SRP285380 | SRR12712238 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 17.5 | -4.4 | -4.0 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 16.9 | -3.3 | -5.1 | ERP116123 | ERR3414907 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 15.3 | 4.0 | 3.9 | SRP103736 | SRR5440841 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 14.8 | -3.6 | -4.2 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 14.7 | -4.6 | -3.2 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 14.1 | -2.8 | -5.1 | ERP116123 | ERR3414881 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 14.1 | -2.8 | -5.1 | ERP116123 | ERR3414882 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 13.4 | -2.3 | -5.8 | SRP201971 | SRR9331191 | RNA-seq analysis of transcriptome reprofiling triggered by different pattern-recognition receptor types |
| 13.4 | -4.2 | -3.2 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 13.4 | -3.3 | -4.0 | SRP050945 | SRR1696837 | Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana |
| 13.1 | -3.6 | -3.6 | SRP090459 | SRR4296043 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI] |
| 13.0 | -3.2 | -4.1 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 12.9 | -3.6 | -3.5 | SRP091641 | SRR4426555 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 12.4 | 3.3 | 3.7 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 12.3 | -2.7 | -4.5 | SRP285090 | SRR12697085 | Differential alteration of plant functions by homologous fungal candidate effectors |
| 12.1 | -3.4 | -3.6 | SRP073724 | SRR3419765 | Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system |
| 12.0 | -3.8 | -3.2 | SRP150217 | SRR7289615 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 11.9 | -5.6 | -2.1 | SRP267137 | SRR12005735 | ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks |
| 11.8 | -3.7 | -3.2 | SRP159259 | SRR7774155 | Diel and circadian gating of Arabidopsis thermotolerance and transcriptional response to heat stress. |
| 11.8 | -3.2 | -3.7 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 11.6 | -4.0 | -2.9 | SRP272650 | SRR12272425 | Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity |
| 11.4 | -3.3 | -3.5 | SRP169564 | SRR8206413 | Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression |
| 11.3 | -4.3 | -2.6 | SRP104760 | SRR5467199 | Interactions between effector-triggered immunity (ETI) and pattern-triggered immunity (PTI) in an Arabidopsis dde2 ein2 pad4 sid2 mutant |
| 11.1 | -3.7 | -3.0 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 11.0 | -3.3 | -3.4 | SRP105272 | SRR5482536 | Cell type transcriptomic profile of the Arabidopsis root stem cell niche |
| 10.9 | -2.7 | -4.1 | SRP145580 | SRR7160920 | Gene expression responses to ABA and to osmotic stress in the pyl112458 379101112 mutant |
| 10.5 | -2.1 | -5.1 | ERP116123 | ERR3414891 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 10.4 | -2.9 | -3.5 | SRP091641 | SRR4426344 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.4 | -2.9 | -3.5 | SRP091641 | SRR4426947 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.4 | -2.9 | -3.5 | SRP091641 | SRR4426893 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.4 | -6.1 | -1.7 | SRP091641 | SRR4426789 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.4 | -4.8 | -2.2 | SRP277946 | SRR12470079 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.3 | -2.2 | -4.8 | SRP238608 | SRR10760445 | Gene expression profiling (RNA-seq) in wild-type Arabidopsis seedlings in response to heat acclimation and heat shock |
| 10.3 | -3.3 | -3.1 | SRP102178 | SRR5360849 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 10.3 | 3.3 | 3.1 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 10.2 | -3.0 | -3.5 | SRP100712 | SRR5285680 | Plant development on ISS differes from the development on the ground and is influenced by the genetic background. |
| 10.1 | -2.4 | -4.3 | SRP018034 | SRR2079784 | Time-course transcriptome of wild-type Arabidopsis leaf |
| 10.0 | -3.0 | -3.4 | SRP101641 | SRR5330626 | Chloroplast signalling gates thermotolerance in Arabidopsis |
The preparation time of this page was 1.0 [sec].
