CoexViewer
Coexpression detail for MEE40 and AT3G29230
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | MEE40 | Pentatricopeptide repeat (PPR) superfamily protein | 824537 | At3g53700 | 0.63 | 6.75 | 6.68 | 5.00 | 55.90 | 3.51 | 2.34 | 3.33 | 2.83 | 1.85 | 3.22 | |
| ath | AT3G29230 | Tetratricopeptide repeat (TPR)-like superfamily protein | 822578 | At3g29230 | 0.63 |
|
coex z = 6.678 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 824537 (z-scored expression) |
822578 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 34.1 | -5.6 | -6.1 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 27.4 | -4.6 | -6.0 | SRP285380 | SRR12712240 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 24.6 | -5.0 | -5.0 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 24.2 | -4.9 | -5.0 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 22.1 | -6.3 | -3.5 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 18.1 | 4.6 | 3.9 | SRP277946 | SRR12470184 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 15.3 | -3.8 | -4.1 | SRP100712 | SRR5285666 | Plant development on ISS differes from the development on the ground and is influenced by the genetic background. |
| 15.0 | 4.2 | 3.5 | SRP277946 | SRR12470192 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.9 | -3.8 | -4.0 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 14.9 | 3.9 | 3.8 | SRP277946 | SRR12470193 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.0 | -2.7 | -5.1 | ERP116123 | ERR3414875 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 13.8 | -3.7 | -3.7 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 13.6 | -5.0 | -2.7 | SRP165731 | SRR8054399 | The embryonic transcriptome of Arabidopsis thaliana |
| 13.4 | 4.1 | 3.3 | SRP277946 | SRR12470188 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.1 | -4.7 | -2.8 | SRP073485 | SRR3401786 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 13.1 | 3.8 | 3.5 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 12.5 | -2.4 | -5.1 | ERP116123 | ERR3414876 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 12.5 | -3.3 | -3.8 | SRP169564 | SRR8206413 | Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression |
| 12.4 | -3.6 | -3.5 | SRP173260 | SRR8310903 | Functional relationship of GUN1 and FUG1 in plastid proteostasis |
| 12.4 | -3.9 | -3.2 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 12.4 | 3.6 | 3.4 | SRP277946 | SRR12470191 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.3 | -3.2 | -3.9 | SRP267137 | SRR12005766 | ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks |
| 12.1 | -3.7 | -3.3 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 12.0 | -3.4 | -3.5 | SRP302122 | SRR13450896 | The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis [RNA-seq] |
| 12.0 | -3.2 | -3.8 | SRP101641 | SRR5330614 | Chloroplast signalling gates thermotolerance in Arabidopsis |
| 11.9 | -2.4 | -4.9 | ERP118109 | ERR3624433 | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
| 11.4 | -3.3 | -3.4 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 11.3 | 3.5 | 3.2 | SRP277946 | SRR12470194 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.2 | -3.7 | -3.0 | SRP091641 | SRR4426959 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 11.2 | 3.3 | 3.4 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 11.1 | -3.3 | -3.4 | SRP150217 | SRR7289598 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 11.0 | -3.2 | -3.5 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 10.8 | 3.9 | 2.8 | SRP254177 | SRR11429303 | Time course of brassinolide treatment on Arabidopsis seedlings |
| 10.8 | -3.6 | -3.0 | SRP101274 | SRR5308808 | During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight. |
| 10.6 | -3.0 | -3.5 | SRP103736 | SRR5440882 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 10.5 | -3.1 | -3.4 | SRP185814 | SRR8570493 | RNA-seq analysis reveals organ-specific cold response in Arabidopsis thaliana |
| 10.4 | -3.4 | -3.1 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 10.3 | -2.3 | -4.4 | SRP126574 | SRR6369550 | Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis |
| 10.2 | 3.2 | 3.2 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 10.2 | -3.1 | -3.3 | SRP103736 | SRR5440873 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 10.1 | -2.6 | -3.9 | SRP279325 | SRR12546073 | Coordination of microbe-host homeostasis via a crosstalk with plant innate immunity |
| 10.1 | -3.7 | -2.8 | SRP269252 | SRR12110257 | Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length |
| 10.0 | -3.2 | -3.1 | SRP103817 | SRR5444399 | Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana |
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