CoexViewer

Coexpression detail for AT3G59110 and TRM3
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT3G59110 Protein kinase superfamily protein 825080 At3g59110 0.6 3.98 3.87 3.02 19.10 1.66 3.67 4.00 2.55 1.30 3.43
ath TRM3 LONGIFOLIA protein 838443 At1g18620 0.6
Platform:

coex z = 3.8679



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 825080
(z-scored expression)		 838443
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
32.7 -5.5 -5.9 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
31.2 -6.0 -5.2 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
28.0 -5.3 -5.3 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
17.9 -4.5 -4.0 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
17.7 -3.9 -4.5 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
16.6 -4.3 -3.8 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
16.0 -3.4 -4.8 SRP073485 SRR3401786 Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation
15.7 -4.0 -3.9 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
15.1 -3.8 -4.0 ERP116123 ERR3414875 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
14.6 4.1 3.5 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.4 -4.8 -3.0 ERP115370 ERR3333443 Arabidopsis tissue atlas
14.2 -3.3 -4.4 ERP116123 ERR3414876 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
13.2 -3.8 -3.5 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
13.2 -3.8 -3.4 SRP165731 SRR8054398 The embryonic transcriptome of Arabidopsis thaliana
13.2 -3.8 -3.4 SRP165731 SRR8054399 The embryonic transcriptome of Arabidopsis thaliana
12.8 -3.8 -3.4 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
12.6 -3.7 -3.4 SRP039091 SRR1179986 Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource
12.4 -3.3 -3.7 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
12.3 -4.2 -2.9 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
12.2 3.3 3.7 SRP277946 SRR12469632 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.2 -3.3 -3.7 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.8 3.6 3.3 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.4 3.7 3.1 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.3 -3.0 -3.7 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
11.2 3.3 3.4 SRP277946 SRR12470189 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.1 -2.9 -3.9 SRP201971 SRR9331191 RNA-seq analysis of transcriptome reprofiling triggered by different pattern-recognition receptor types
11.1 -5.3 -2.1 ERP118109 ERR3624365 Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
11.0 -3.4 -3.2 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
10.8 3.7 2.9 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
10.7 -3.4 -3.1 SRP285119 SRR12698780 Time of day prioritizes the pool of translating mRNAs in response to heat stress
10.6 -3.3 -3.2 SRP288674 SRR12903442 A. thaliana WT and ICT1 mutant treated vs. non treated with I3C
10.6 -3.0 -3.6 ERP116123 ERR3414883 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.6 -3.5 -3.1 SRP201680 SRR9313625 RNA-seq of 14 days old arabidopsis in Col hda6 ldl1/2 and hda6/ldl1/2
10.5 3.5 3.0 SRP311610 SRR14028736 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.3 3.3 3.1 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 -2.9 -3.5 SRP285090 SRR12697085 Differential alteration of plant functions by homologous fungal candidate effectors
10.1 3.3 3.1 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
Note: Samples whose contribution is more than 10 are outputted.



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