CoexViewer
Coexpression detail for AT4G10070 and AT1G33680
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | AT4G10070 | KH domain-containing protein | 826598 | At4g10070 | 0.65 | 8.07 | 6.58 | 7.38 | 134.20 | 1.45 | 3.05 | 1.94 | 1.23 | 0.45 | 4.37 | |
| ath | AT1G33680 | KH domain-containing protein | 840259 | At1g33680 | 0.65 |
|
coex z = 6.5782 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 826598 (z-scored expression) |
840259 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 44.1 | -6.3 | -7.0 | SRP090458 | SRR4295856 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat] |
| 30.3 | -5.7 | -5.3 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 29.3 | -5.2 | -5.6 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 21.6 | -6.0 | -3.6 | SRP285380 | SRR12712238 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 19.1 | -4.4 | -4.4 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 19.1 | -4.0 | -4.8 | SRP165731 | SRR8054398 | The embryonic transcriptome of Arabidopsis thaliana |
| 17.5 | 4.3 | 4.1 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 17.4 | -4.0 | -4.3 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 16.7 | -3.7 | -4.5 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 16.6 | -3.9 | -4.3 | SRP063017 | SRR2221848 | RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes |
| 15.5 | -4.0 | -3.9 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 14.8 | 3.9 | 3.8 | SRP277946 | SRR12470192 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.3 | -3.6 | -4.0 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 14.2 | -3.8 | -3.7 | SRP281951 | SRR12620957 | RNA-Seq experiment on Arabidopsis seedlings regarding SLIM1 and EIL1 function at low S |
| 14.1 | 3.7 | 3.8 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 13.9 | -3.7 | -3.7 | SRP093913 | SRR5054306 | Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis |
| 13.5 | 3.6 | 3.8 | SRP285090 | SRR12697065 | Differential alteration of plant functions by homologous fungal candidate effectors |
| 13.5 | -3.5 | -3.8 | SRP176451 | SRR8404535 | Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq] |
| 13.4 | 3.7 | 3.7 | SRP166137 | SRR8078926 | RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana) |
| 13.3 | -2.1 | -6.3 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 13.1 | -3.4 | -3.9 | SRP251062 | SRR11206305 | Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants |
| 12.9 | 3.6 | 3.6 | SRP277946 | SRR12470184 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.8 | 3.3 | 3.9 | SRP277946 | SRR12470193 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.8 | 4.4 | 2.9 | SRP325022 | SRR14877257 | Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells |
| 12.7 | -3.4 | -3.7 | SRP269252 | SRR12110257 | Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length |
| 12.6 | -4.2 | -3.0 | SRP090459 | SRR4296043 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI] |
| 12.6 | -2.7 | -4.7 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 12.6 | 3.3 | 3.8 | SRP277946 | SRR12470188 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.3 | -3.6 | -3.4 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 12.3 | 3.4 | 3.6 | SRP277946 | SRR12470191 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.3 | -3.3 | -3.7 | SRP169564 | SRR8206413 | Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression |
| 12.2 | 3.4 | 3.5 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 12.1 | -3.7 | -3.3 | SRP150217 | SRR7289599 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 12.1 | -3.4 | -3.5 | SRP163443 | SRR8060876 | RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration |
| 12.0 | -3.7 | -3.2 | SRP337622 | SRR15931267 | Hydropriming: the plant endophyte Pseudomonas argenenensis SA190 induces drought tolerance in plants via reprograming aquaporin expression and water use efficiency |
| 11.9 | 3.5 | 3.4 | SRP351684 | SRR17281133 | Transcriptomic profile of FERONIA mutant treated with Aradopside |
| 11.9 | 3.4 | 3.5 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 11.8 | -3.6 | -3.3 | SRP371011 | SRR18808259 | Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation |
| 11.8 | 3.3 | 3.6 | SRP311610 | SRR14028736 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 11.7 | 3.1 | 3.7 | SRP266133 | SRR11934683 | Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions |
| 11.5 | 3.3 | 3.5 | SRP311610 | SRR14028737 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 11.4 | -3.5 | -3.3 | SRP126872 | SRR6381405 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 11.4 | 3.2 | 3.5 | SRP311610 | SRR14028738 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 11.4 | 3.1 | 3.7 | SRP277946 | SRR12470208 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.2 | 3.3 | 3.4 | SRP365283 | SRR18430906 | Time-series RNAseq analysis following lateral root induction by gravistimulation |
| 11.2 | -3.2 | -3.5 | SRP162520 | SRR7899134 | Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0), at 10min to 12h after detachment Col-0, coi1-2 and sdg8-2 seedlings. |
| 11.2 | 3.2 | 3.5 | SRP189792 | SRR8800692 | Role of AtMLKLs in response to powdery mildew fungus |
| 11.1 | 3.3 | 3.3 | SRP277946 | SRR12470190 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.0 | 3.2 | 3.4 | SRP311610 | SRR14028739 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 11.0 | 3.3 | 3.4 | SRP029957 | SRR988015 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 11.0 | 3.5 | 3.2 | SRP051513 | SRR1734308 | Alterations to hormone regulated defense and stress response networks contribute to the greater growth of Arabidopsis F1 hybrids |
| 10.9 | -2.9 | -3.7 | SRP117360 | SRR6030900 | The Arabidopsis transcription factor TCP5 during petal and inflorescence development |
| 10.8 | -3.0 | -3.7 | SRP272650 | SRR12272429 | Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity |
| 10.7 | -3.3 | -3.2 | SRP148699 | SRR7204075 | An essential role for Abscisic acid in the regulation of xylem fibre differentiation |
| 10.4 | -3.3 | -3.1 | SRP126872 | SRR6381404 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 10.3 | -3.0 | -3.4 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.3 | -3.5 | -3.0 | SRP073485 | SRR3401801 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 10.3 | -5.0 | -2.0 | SRP105272 | SRR5482535 | Cell type transcriptomic profile of the Arabidopsis root stem cell niche |
| 10.3 | -4.0 | -2.6 | SRP157719 | SRR7688912 | Metabolic labeling of RNAs uncovers hidden features and dynamics of the Arabidopsis thaliana transcriptome [ERIC] |
| 10.2 | -3.3 | -3.1 | SRP150217 | SRR7289615 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.2 | 3.4 | 3.0 | SRP254177 | SRR11429303 | Time course of brassinolide treatment on Arabidopsis seedlings |
| 10.1 | 3.3 | 3.0 | SRP277946 | SRR12470201 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.1 | -2.4 | -4.3 | SRP315390 | SRR14275190 | The E3 Ubiquitin Ligase AFF1 targets ARF19 to the proteasome |
| 10.0 | -3.1 | -3.2 | SRP114806 | SRR5894445 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 10.0 | -3.2 | -3.1 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.0 | 3.0 | 3.3 | SRP112501 | SRR5831044 | Combining chemical and genetic approaches to increase drought resistance in plants |
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