CoexViewer
Coexpression detail for AT4G17000 and HIK
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | AT4G17000 | neurofilament heavy protein | 827408 | At4g17000 | 0.22 | 11.90 | 12.41 | 8.16 | 12.20 | 2.67 | 3.78 | 1.68 | 0.97 | 1.31 | 5.65 | |
| ath | HIK | ATP binding microtubule motor family protein | 838418 | At1g18370 | 0.22 |
|
coex z = 12.4146 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 827408 (z-scored expression) |
838418 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 34.4 | -5.6 | -6.1 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 32.2 | -6.1 | -5.3 | SRP090458 | SRR4295856 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat] |
| 25.8 | -6.0 | -4.3 | SRP362867 | SRR18254733 | Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses |
| 25.8 | -6.0 | -4.3 | SRP324081 | SRR14813598 | ARATH-IN-OUT |
| 17.1 | -4.1 | -4.1 | SRP100064 | SRR5263005 | Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary? |
| 16.7 | -3.5 | -4.8 | SRP285090 | SRR12697085 | Differential alteration of plant functions by homologous fungal candidate effectors |
| 16.1 | -3.7 | -4.3 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 16.0 | -3.9 | -4.2 | SRP271641 | SRR12211735 | Arabidopsis thaliana ecotypes Rodasen-47 (Sweden) and Castelnuovo-12 (Italy) grown in high light and/or cold |
| 15.4 | -3.3 | -4.6 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 14.8 | -3.6 | -4.1 | SRP257291 | SRR11568018 | Gene expression in Arabidopsis expressing a Hyaloperonospora arabidopsidis effector |
| 14.3 | -3.7 | -3.9 | SRP050945 | SRR1696837 | Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana |
| 14.2 | -3.7 | -3.8 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 13.7 | -3.7 | -3.7 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 13.6 | -2.8 | -4.9 | SRP214585 | SRR9681415 | Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins |
| 13.1 | -5.3 | -2.4 | SRP073485 | SRR3401785 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 12.2 | -3.4 | -3.6 | SRP242317 | SRR10905209 | The characterization of Mediator12 and 13 as conditional positive gene regulators in Arabidopsis [RNA-seq] |
| 12.2 | -3.6 | -3.4 | SRP282437 | SRR12642285 | Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids |
| 12.0 | -3.4 | -3.6 | SRP044776 | SRR1523938 | High-resolution tissue-specific analysis of the Arabidopsis transcriptome in response to shade |
| 12.0 | -2.8 | -4.2 | SRP165731 | SRR8054398 | The embryonic transcriptome of Arabidopsis thaliana |
| 11.9 | -3.4 | -3.5 | ERP115370 | ERR3333441 | Arabidopsis tissue atlas |
| 11.7 | -3.8 | -3.1 | SRP187062 | SRR8645799 | Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis |
| 11.3 | -4.6 | -2.4 | SRP277946 | SRR12469956 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.0 | -3.2 | -3.5 | SRP100064 | SRR5263228 | Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary? |
| 11.0 | -2.5 | -4.5 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 10.8 | -4.3 | -2.5 | SRP187062 | SRR8645798 | Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis |
| 10.8 | -3.0 | -3.5 | SRP187156 | SRR8648403 | Genome-wide profiling of Arabidopsis thaliana Col-0 and ein2/jar1 host responses to Macrophomina phaseolina infection |
| 10.7 | -3.3 | -3.3 | SRP091641 | SRR4426614 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.7 | -3.3 | -3.3 | SRP091641 | SRR4426711 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.7 | -3.3 | -3.3 | SRP091641 | SRR4426947 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.7 | -3.3 | -3.3 | SRP091641 | SRR4426712 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.7 | -3.3 | -3.3 | SRP091641 | SRR4426850 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.7 | -3.3 | -3.3 | SRP091641 | SRR4426620 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.7 | -3.3 | -3.3 | SRP091641 | SRR4426632 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.7 | -3.3 | -3.3 | SRP091641 | SRR4426351 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.6 | -2.3 | -4.6 | SRP100064 | SRR5263229 | Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary? |
| 10.6 | -2.7 | -3.9 | SRP279992 | SRR12582696 | Gene expression responses to ABA and to osmotic stress in the bon123 triple mutant |
| 10.3 | -5.3 | -1.9 | SRP114806 | SRR5894743 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 10.3 | -3.2 | -3.2 | SRP150217 | SRR7289615 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.1 | -4.2 | -2.4 | SRP100712 | SRR5285767 | Plant development on ISS differes from the development on the ground and is influenced by the genetic background. |
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