CoexViewer

Coexpression detail for AT4G28830 and AT3G03010
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-e.c1-0
ath AT4G28830 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 829004 At4g28830 0.28 5.61 5.85 0.48
ath AT3G03010 Peptidyl-tRNA hydrolase II (PTH2) family protein 821157 At3g03010 0.28
Platform:

coex z = 5.8466



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 829004
(z-scored expression)		 821157
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
35.0 -5.5 -6.3 ERP115370 ERR3333443 Arabidopsis tissue atlas
34.9 -5.5 -6.3 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
24.4 -4.5 -5.4 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
21.0 -4.5 -4.7 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
20.6 -4.8 -4.3 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
20.0 -4.4 -4.5 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
19.7 -3.9 -5.0 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
18.2 4.3 4.2 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
18.2 -5.4 -3.4 SRP091641 SRR4426351 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
16.6 4.2 4.0 SRP097877 SRR5205694 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
16.6 -3.4 -4.9 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
16.4 -4.4 -3.8 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
15.4 -4.5 -3.4 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
15.2 -4.2 -3.6 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
15.1 -3.9 -3.8 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
13.8 -5.4 -2.5 SRP091641 SRR4426353 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
13.6 -4.1 -3.4 SRP090459 SRR4296060 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
12.8 -3.7 -3.4 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
12.0 -3.1 -3.9 SRP163443 SRR8060876 RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration
12.0 -3.6 -3.3 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
11.7 -2.7 -4.3 SRP101274 SRR5308791 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
11.5 -3.8 -3.0 SRP165731 SRR8054398 The embryonic transcriptome of Arabidopsis thaliana
11.3 3.4 3.4 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
11.1 2.9 3.9 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
11.1 3.2 3.4 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.0 -5.4 -2.0 SRP091641 SRR4426360 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
11.0 -3.9 -2.8 SRP102178 SRR5360867 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
10.9 -3.0 -3.7 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.9 -3.5 -3.1 ERP116123 ERR3414876 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.8 -4.0 -2.7 SRP334993 SRR15679198 Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes
10.8 -3.1 -3.5 SRP150217 SRR7289570 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.7 -2.9 -3.7 SRP234036 SRR10560325 Gene expression profile of Arabidopsis thaliana wild type and siz1-2 mutant during in vitro shoot regeneration on callus inducing media (CIM) and shoot inducing media (SIM)
10.7 -3.5 -3.0 SRP148699 SRR7204075 An essential role for Abscisic acid in the regulation of xylem fibre differentiation
10.6 -3.0 -3.5 SRP219510 SRR10030487 RNA-seq analysis of D-tagatose-treated Arabidopsis thaliana inoculated with Hyaloperonospora arabidopsidis isolate Noco-2
10.6 -3.3 -3.2 SRP137763 SRR6950029 The SOG1 transcriptional activator and the MYB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [RNA-seq t vs t0]
10.6 3.5 3.1 SRP277946 SRR12470059 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 -3.0 -3.5 SRP093913 SRR5054306 Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis
10.4 3.3 3.1 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.3 -5.4 -1.9 SRP091641 SRR4426941 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.2 -3.3 -3.1 SRP101274 SRR5308642 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
Note: Samples whose contribution is more than 10 are outputted.



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