CoexViewer

Coexpression detail for SK2 and AT1G77930
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath SK2 shikimate kinase 2 830108 At4g39540 0.63 4.15 3.65 3.52 1672.60 0.69 2.18 2.18 -0.49 1.55 1.00
ath AT1G77930 Chaperone DnaJ-domain superfamily protein 844128 At1g77930 0.63
Platform:

coex z = 3.6517



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 830108
(z-scored expression)		 844128
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
46.5 -6.9 -6.8 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
28.9 4.8 6.0 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
28.4 -5.6 -5.1 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
25.0 -4.7 -5.3 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
24.4 5.1 4.8 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
22.1 -4.3 -5.2 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
19.4 -4.4 -4.4 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
19.2 -4.2 -4.6 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
18.9 4.3 4.4 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
18.7 -4.4 -4.2 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
16.4 4.2 3.9 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
16.4 4.1 4.0 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
16.1 -3.9 -4.1 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
15.3 3.8 4.0 SRP277946 SRR12469632 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.9 4.1 3.6 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
14.2 -4.3 -3.3 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
13.9 -3.6 -3.9 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
13.7 3.7 3.7 SRP277946 SRR12470185 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.4 -3.9 -3.4 SRP050945 SRR1696859 Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana
13.4 -3.7 -3.7 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
13.2 3.8 3.5 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
12.8 -3.6 -3.5 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
12.5 3.5 3.5 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
12.2 4.0 3.0 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.1 -3.7 -3.3 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
12.1 3.3 3.6 SRP311610 SRR14028739 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
12.0 -3.7 -3.3 SRP044776 SRR1523922 High-resolution tissue-specific analysis of the Arabidopsis transcriptome in response to shade
11.9 -4.0 -3.0 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
11.9 3.7 3.2 SRP097877 SRR5205694 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
11.7 -3.7 -3.1 SRP272650 SRR12272429 Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity
11.5 3.1 3.7 SRP311610 SRR14028736 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
11.4 3.5 3.2 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.1 3.5 3.2 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.1 -3.5 -3.2 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.0 -3.4 -3.3 SRP361288 SRR18124820 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
10.9 3.0 3.6 SRP311610 SRR14028737 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.8 -3.5 -3.1 ERP116123 ERR3414638 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.7 -2.8 -3.9 SRP258701 SRR11614791 Ethylene modulates the dynamics of translation via GCN2 and EIN2 in Arabidopsis under submergence
10.7 -3.3 -3.2 SRP150217 SRR7289570 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.7 -3.4 -3.2 SRP117360 SRR6030903 The Arabidopsis transcription factor TCP5 during petal and inflorescence development
10.6 -3.6 -3.0 SRP065994 SRR2932456 Identification of plant vacuolar transporters mediating phosphate storage
10.6 -2.2 -4.9 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
10.5 -3.8 -2.8 SRP173260 SRR8310903 Functional relationship of GUN1 and FUG1 in plastid proteostasis
10.5 2.9 3.7 SRP311610 SRR14028738 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.4 3.1 3.4 SRP277946 SRR12470201 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 3.3 3.2 SRP285090 SRR12697055 Differential alteration of plant functions by homologous fungal candidate effectors
10.4 3.3 3.2 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
10.4 3.0 3.4 SRP277946 SRR12470189 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.3 -2.9 -3.6 SRP126872 SRR6381398 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
10.2 -5.5 -1.9 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
10.1 2.7 3.7 SRP114806 SRR5894687 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
10.1 -3.4 -3.0 SRP163443 SRR8060876 RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration
10.0 3.2 3.1 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
Note: Samples whose contribution is more than 10 are outputted.



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