CoexViewer
Coexpression detail for AT5G12410 and AT3G15970
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | AT5G12410 | THUMP domain-containing protein | 831116 | At5g12410 | 0.69 | 8.65 | 8.39 | 6.57 | 235.20 | 2.13 | 1.60 | 2.60 | 1.82 | 2.26 | 7.00 | |
| ath | AT3G15970 | NUP50 (Nucleoporin 50 kDa) protein | 820841 | At3g15970 | 0.69 |
|
coex z = 8.3907 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 831116 (z-scored expression) |
820841 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 42.2 | -6.2 | -6.8 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 32.5 | -4.8 | -6.8 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 29.2 | -5.3 | -5.6 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 25.3 | -5.2 | -4.9 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 21.7 | -5.0 | -4.3 | SRP090459 | SRR4296043 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI] |
| 21.1 | 4.7 | 4.5 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 20.5 | -4.8 | -4.3 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 19.4 | -4.8 | -4.1 | SRP090458 | SRR4295856 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat] |
| 17.5 | -4.7 | -3.7 | SRP169564 | SRR8206413 | Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression |
| 17.0 | -3.3 | -5.2 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 16.7 | 4.1 | 4.1 | SRP103736 | SRR5440841 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 16.5 | -4.7 | -3.5 | SRP086629 | SRR4175056 | A global view of RNA-protein interactions reveals novel root hair cell fate regulators |
| 15.4 | -4.0 | -3.9 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 15.1 | -3.7 | -4.1 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 14.8 | -3.7 | -4.0 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 14.6 | 3.9 | 3.7 | SRP254177 | SRR11429303 | Time course of brassinolide treatment on Arabidopsis seedlings |
| 14.3 | -4.2 | -3.4 | SRP150217 | SRR7289599 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 14.1 | -3.7 | -3.9 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 13.9 | -4.1 | -3.4 | SRP105272 | SRR5482536 | Cell type transcriptomic profile of the Arabidopsis root stem cell niche |
| 13.9 | -4.2 | -3.3 | SRP258701 | SRR11614791 | Ethylene modulates the dynamics of translation via GCN2 and EIN2 in Arabidopsis under submergence |
| 13.6 | -4.5 | -3.0 | ERP118109 | ERR3624432 | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
| 13.3 | -3.6 | -3.7 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 13.3 | -3.4 | -3.8 | SRP372716 | SRR18963423 | Interpreting gene co-regulation and metabolic profiling in the unique starch metabolism of Arabidopsis dpe2/phs1 mutant reveals insights into control mechanism of the starch granule number |
| 12.6 | -3.0 | -4.2 | SRP285380 | SRR12712238 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 12.3 | 3.5 | 3.5 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 12.2 | 3.4 | 3.6 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 12.2 | 3.5 | 3.5 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 12.1 | -3.4 | -3.5 | SRP137763 | SRR6950029 | The SOG1 transcriptional activator and the MYB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [RNA-seq t vs t0] |
| 12.0 | 3.2 | 3.8 | SRP103736 | SRR5440842 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 11.9 | 3.4 | 3.5 | SRP277946 | SRR12470208 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.8 | -3.5 | -3.4 | SRP277946 | SRR12469603 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.8 | -4.0 | -2.9 | SRP083970 | SRR4115362 | The Cytoplasmic mRNA Decay Landscape of Arabidopsis Seedlings [RNA-seq] |
| 11.7 | -3.3 | -3.6 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 11.5 | -3.4 | -3.4 | SRP126872 | SRR6381398 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 11.5 | 3.5 | 3.3 | SRP365283 | SRR18430906 | Time-series RNAseq analysis following lateral root induction by gravistimulation |
| 11.5 | 3.4 | 3.4 | SRP266133 | SRR11934683 | Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions |
| 11.4 | 3.3 | 3.4 | SRP351684 | SRR17281133 | Transcriptomic profile of FERONIA mutant treated with Aradopside |
| 11.3 | -3.7 | -3.1 | SRP073379 | SRR3393591 | Arabidopsis BIC1 inactivates CRY2 by suppressing the blue light-dependent cryptochrome dimerization |
| 11.1 | -2.9 | -3.9 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.9 | -3.8 | -2.8 | SRP155742 | SRR8699957 | Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors |
| 10.9 | -2.1 | -5.1 | SRP103817 | SRR5444475 | Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana |
| 10.9 | -1.9 | -5.7 | SRP070918 | SRR3193306 | Time course transcriptional profiles of the Arabidopsis thaliana response to flg22 infiltration for all combinatorial genotypes of the alleles dde2-2, ein2-1, pad4-1, and sid2-2. |
| 10.9 | -3.2 | -3.4 | SRP163443 | SRR8060876 | RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration |
| 10.8 | -3.1 | -3.5 | SRP073724 | SRR3419765 | Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system |
| 10.8 | -3.3 | -3.3 | SRP091641 | SRR4426351 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.8 | 3.2 | 3.3 | SRP214325 | SRR9672817 | Temporal comparison of leaf transcriptomes between early-flowering Arabidopsis thaliana atx1/atx3/atx4 triple mutants and vegetative WT Col-0 plants of the same age. |
| 10.8 | -3.6 | -3.0 | SRP091641 | SRR4426346 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.7 | -2.8 | -3.9 | SRP097877 | SRR5205677 | An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 10.6 | 3.0 | 3.5 | SRP277946 | SRR12470188 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.6 | -4.0 | -2.7 | SRP091641 | SRR4426344 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.6 | 3.5 | 3.1 | SRP189792 | SRR8800692 | Role of AtMLKLs in response to powdery mildew fungus |
| 10.5 | -3.4 | -3.1 | SRP050945 | SRR1696859 | Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana |
| 10.3 | -3.1 | -3.4 | SRP102178 | SRR5360867 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 10.3 | -4.0 | -2.6 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 10.2 | -3.1 | -3.3 | SRP194106 | SRR8983768 | Arabidopsis thaliana 35S:ANT-GR Transcriptome |
| 10.2 | -2.8 | -3.6 | SRP285090 | SRR12697085 | Differential alteration of plant functions by homologous fungal candidate effectors |
| 10.2 | -3.2 | -3.2 | SRP117360 | SRR6030903 | The Arabidopsis transcription factor TCP5 during petal and inflorescence development |
| 10.1 | -3.7 | -2.7 | SRP285380 | SRR12712251 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 10.1 | 3.0 | 3.4 | SRP029957 | SRR988015 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 10.0 | -3.5 | -2.9 | SRP073485 | SRR3401786 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 10.0 | -3.6 | -2.8 | SRP101641 | SRR5330623 | Chloroplast signalling gates thermotolerance in Arabidopsis |
The preparation time of this page was 0.7 [sec].
