CoexViewer

Coexpression detail for PDF1B and PPD5
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath PDF1B peptide deformylase 1B 831318 At5g14660 0.62 9.18 9.52 6.36 32.20 3.52 2.05 4.60 5.47 3.15 5.04
ath PPD5 PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) 831016 At5g11450 0.62
Platform:

coex z = 9.5214



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 831318
(z-scored expression)		 831016
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
39.9 -6.0 -6.7 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
27.6 -6.3 -4.4 SRP155742 SRR8699976 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
22.0 -4.5 -4.9 SRP073485 SRR3401786 Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation
21.1 -4.6 -4.6 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
20.9 -4.4 -4.8 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
20.5 -4.3 -4.8 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
17.7 4.8 3.7 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
17.0 4.0 4.3 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
16.4 -4.0 -4.1 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
16.2 4.3 3.8 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.7 -3.1 -4.7 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
14.5 -3.7 -3.9 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
14.4 -3.9 -3.7 ERP116123 ERR3414875 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
13.5 -3.7 -3.6 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
13.3 -3.4 -3.9 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
12.9 -3.4 -3.8 SRP258701 SRR11614791 Ethylene modulates the dynamics of translation via GCN2 and EIN2 in Arabidopsis under submergence
12.8 3.5 3.7 SRP277946 SRR12470185 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.7 3.9 3.3 SRP277946 SRR12469632 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.3 -3.9 -3.2 ERP116123 ERR3414884 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.2 -4.6 -2.7 ERP115370 ERR3333443 Arabidopsis tissue atlas
12.1 -3.1 -3.9 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
11.7 -3.4 -3.4 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
11.6 3.5 3.4 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
11.6 3.4 3.4 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
11.5 -3.3 -3.5 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
11.4 -3.3 -3.5 SRP114806 SRR5894497 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
11.4 -3.8 -3.0 SRP126574 SRR6369426 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
11.3 3.5 3.2 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
11.1 -2.8 -3.9 ERP116123 ERR3414876 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.8 -3.4 -3.2 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
10.6 3.3 3.2 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.5 -3.4 -3.1 SRP150217 SRR7289598 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.4 -2.8 -3.8 SRP114806 SRR5894632 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
10.4 -3.4 -3.0 SRP101641 SRR5330626 Chloroplast signalling gates thermotolerance in Arabidopsis
10.4 -3.4 -3.1 SRP091641 SRR4426632 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.2 2.9 3.6 SRP277946 SRR12470067 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 -4.1 -2.5 SRP277946 SRR12470099 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 3.1 3.2 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
Note: Samples whose contribution is more than 10 are outputted.



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