CoexViewer

Coexpression detail for TRP1 and AT1G24807
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-e.c1-0
ath TRP1 tryptophan biosynthesis 1 831666 At5g17990 0.85 5.24 5.38 1.94
ath AT1G24807 Glutamine amidotransferase type 1 family protein 839085 At1g24807 0.85
Platform:

coex z = 5.381



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 831666
(z-scored expression)		 839085
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
33.5 -6.1 -5.5 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
19.4 4.2 4.6 SRP279501 SRR12558734 Leaf excision evokes an ultradian gene expression rhythm to prime de novo root regeneration
18.0 -3.3 -5.5 SRP102178 SRR5360867 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
16.5 -3.9 -4.3 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
16.3 -5.1 -3.2 ERP115370 ERR3333443 Arabidopsis tissue atlas
15.7 -4.1 -3.8 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
15.6 4.5 3.5 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
15.5 -4.3 -3.6 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
15.4 -3.2 -4.8 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
14.9 -3.4 -4.4 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
14.1 3.7 3.8 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
14.0 -2.5 -5.7 SRP100712 SRR5285666 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
13.1 -3.5 -3.8 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
12.6 4.9 2.6 SRP277946 SRR12469638 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.4 3.4 3.6 SRP285090 SRR12697055 Differential alteration of plant functions by homologous fungal candidate effectors
12.2 -2.9 -4.2 SRP163443 SRR8060876 RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration
12.1 -3.1 -3.9 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
12.1 -3.4 -3.5 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.7 3.6 3.2 SRP114806 SRR5894659 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
11.5 -2.2 -5.2 SRP200395 SRR9200677 UVR8-mediated changes in gene expression in response to UV-B, compared to genes misexpressed in pif4pif5 mutants
11.0 -3.8 -2.9 SRP185814 SRR8570493 RNA-seq analysis reveals organ-specific cold response in Arabidopsis thaliana
10.8 3.2 3.3 SRP365283 SRR18430925 Time-series RNAseq analysis following lateral root induction by gravistimulation
10.7 -2.7 -4.0 SRP033661 SRR1046907 Root transcriptomes for the 19 parents of the Arabidopsis thaliana MAGIC lines
10.7 -1.9 -5.6 SRP100938 SRR5304607 During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight.
10.6 -5.2 -2.0 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
10.5 -3.4 -3.1 SRP050945 SRR1696859 Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana
10.4 3.1 3.4 SRP052276 SRR1760198 Arabidopsis thaliana Transcriptome or Gene expression
10.2 3.7 2.8 SRP114806 SRR5894660 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
10.2 -3.1 -3.3 SRP073724 SRR3419765 Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
10.1 3.3 3.1 SRP091641 SRR4426761 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.1 2.2 4.6 SRP218723 SRR9995084 Plant 22-nt siRNAs mediate translational repression and stress adaptation
Note: Samples whose contribution is more than 10 are outputted.



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