CoexViewer
Coexpression detail for SPX1 and PFA-DSP4
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | SPX1 | SPX domain-containing protein 1 | 832137 | At5g20150 | 0.59 | 15.80 | 13.84 | 13.47 | 7.30 | 5.19 | 2.04 | 4.28 | 1.58 | 2.05 | 6.52 | |
| ath | PFA-DSP4 | Phosphotyrosine protein phosphatases superfamily protein | 825706 | At4g03960 | 0.59 |
|
coex z = 13.8446 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 832137 (z-scored expression) |
825706 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 27.1 | 6.2 | 4.3 | SRP277946 | SRR12469766 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 25.4 | 5.3 | 4.8 | SRP277946 | SRR12469767 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 25.2 | 5.9 | 4.2 | SRP277946 | SRR12469768 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 23.4 | -3.7 | -6.4 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 23.2 | 5.2 | 4.5 | SRP277946 | SRR12469638 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 22.4 | 6.0 | 3.7 | SRP277946 | SRR12469770 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 20.9 | -4.9 | -4.3 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 20.7 | 5.8 | 3.6 | SRP277946 | SRR12469769 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 16.8 | 3.9 | 4.3 | SRP151817 | SRR7465450 | Genome-wide identification of putative translation regulator cis-Natural Antisense Transcripts in Arabidopsis thaliana |
| 16.4 | -3.2 | -5.1 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 16.4 | 4.9 | 3.3 | SRP277946 | SRR12469639 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 15.5 | -3.8 | -4.0 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 15.2 | -3.6 | -4.2 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 14.8 | -3.6 | -4.1 | SRP126574 | SRR6369375 | Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis |
| 14.7 | 3.9 | 3.7 | SRP277946 | SRR12469643 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.6 | -2.8 | -5.1 | SRP150217 | SRR7289570 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 14.3 | -3.3 | -4.4 | SRP150217 | SRR7289599 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 14.3 | -3.3 | -4.4 | SRP150217 | SRR7289615 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 13.7 | -3.8 | -3.6 | SRP103736 | SRR5440873 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 13.5 | -3.5 | -3.8 | SRP126872 | SRR6381398 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 13.0 | 3.6 | 3.7 | SRP151817 | SRR7465414 | Genome-wide identification of putative translation regulator cis-Natural Antisense Transcripts in Arabidopsis thaliana |
| 12.2 | 3.6 | 3.4 | SRP097877 | SRR5205694 | An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 11.9 | -2.7 | -4.5 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 11.4 | -3.4 | -3.3 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 10.7 | 3.3 | 3.2 | SRP095347 | SRR5120428 | Genetic influences on gene expression in Arabidopsis thaliana |
| 10.5 | -2.3 | -4.6 | SRP229078 | SRR10416654 | Global transcriptomic analysis of Arabidopsis thaliana ecotype Columbia-0 subjected to magnesium deficiency |
| 10.4 | -3.3 | -3.1 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 10.4 | 2.9 | 3.6 | SRP155742 | SRR7620901 | Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors |
| 10.4 | -3.1 | -3.3 | SRP269252 | SRR12110257 | Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length |
| 10.3 | -4.1 | -2.5 | SRP126574 | SRR6369550 | Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis |
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