CoexViewer

Coexpression detail for AT5G41400 and AT4G09890
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT5G41400 RING/U-box superfamily protein 834142 At5g41400 0.47 5.82 5.12 4.95 12.00 3.96 2.46 5.49 1.33 -2.31 2.44
ath AT4G09890 mediator of RNA polymerase II transcription subunit, putative (DUF3511) 826579 At4g09890 0.47
Platform:

coex z = 5.115



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 834142
(z-scored expression)		 826579
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
33.5 -5.2 -6.4 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
27.9 -3.9 -7.1 SRP222258 SRR15122126 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
23.3 -4.5 -5.2 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
22.7 -5.2 -4.4 ERP115370 ERR3333443 Arabidopsis tissue atlas
21.3 5.0 4.2 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
19.6 -4.5 -4.4 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
17.0 -4.1 -4.2 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
15.7 4.0 3.9 ERP123539 ERR4471742 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
14.9 4.5 3.3 ERP123539 ERR4471741 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
14.3 -3.5 -4.1 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
13.5 3.1 4.4 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.3 -3.6 -3.7 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
13.2 -3.5 -3.8 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
13.0 -2.9 -4.5 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
12.4 3.3 3.8 SRP097877 SRR5205694 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
12.2 -3.2 -3.8 SRP150217 SRR7289570 Widespread inter-individual gene expression variability in Arabidopsis thaliana
12.0 -3.2 -3.8 SRP126872 SRR6381398 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
11.5 -3.4 -3.4 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
11.5 -4.5 -2.6 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.5 -3.6 -3.2 SRP150217 SRR7289585 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.4 4.2 2.7 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
11.2 -5.7 -2.0 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
11.1 3.8 2.9 SRP277946 SRR12469766 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.1 4.3 2.6 SRP277946 SRR12469638 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.0 -3.7 -3.0 SRP100938 SRR5304681 During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight.
11.0 2.8 3.9 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.5 -3.4 -3.1 SRP065994 SRR2932456 Identification of plant vacuolar transporters mediating phosphate storage
10.2 3.5 2.9 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
10.1 -3.0 -3.4 SRP091641 SRR4426344 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.1 2.5 4.0 SRP277946 SRR12470185 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.0 2.9 3.5 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
Note: Samples whose contribution is more than 10 are outputted.



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