CoexViewer

Coexpression detail for AT5G53920 and AT3G58520
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT5G53920 ribosomal protein L11 methyltransferase-like protein 835475 At5g53920 0.23 8.47 7.19 7.44 17.80 0.42 3.16 1.83 2.25 0.13 4.87
ath AT3G58520 Ubiquitin carboxyl-terminal hydrolase family protein 825021 At3g58520 0.23
Platform:

coex z = 7.1935



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 835475
(z-scored expression)		 825021
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
29.3 -5.5 -5.3 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
24.1 -4.6 -5.3 SRP285119 SRR12698763 Time of day prioritizes the pool of translating mRNAs in response to heat stress
21.3 -4.4 -4.8 SRP100712 SRR5285687 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
20.9 -5.4 -3.8 ERP115370 ERR3333443 Arabidopsis tissue atlas
20.0 -4.1 -4.9 SRP101274 SRR5308829 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
19.9 -4.6 -4.3 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
19.3 -3.0 -6.4 SRP114806 SRR5894498 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
16.0 -4.0 -4.0 SRP091641 SRR4426596 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
14.9 -3.9 -3.8 SRP090457 SRR4295748 RNA-seq of Arabidopsis thaliana seedlings treated with MeJA or flg22 under full and low phosphate conditions
14.8 -4.4 -3.4 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
14.3 -3.4 -4.3 ERP013651 ERR1194838 Transcriptional response of Arabidopsis thaliana in systemic acquired resistance: critical roles for pipecolic acid and salicylic acid
13.8 -2.2 -6.4 SRP114806 SRR5894507 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
13.4 -3.3 -4.1 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
13.3 -2.4 -5.7 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
12.8 -2.4 -5.4 SRP100064 SRR5263016 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
12.6 -4.6 -2.8 SRP285119 SRR12698780 Time of day prioritizes the pool of translating mRNAs in response to heat stress
12.6 -6.7 -1.9 SRP091641 SRR4426350 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
12.5 -3.8 -3.3 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
12.1 -2.7 -4.4 SRP233656 SRR10555754 Arabidopsis QUANTIREX
12.1 -3.2 -3.8 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
11.9 -3.3 -3.6 SRP158306 SRR7695155 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.8 -3.8 -3.1 SRP302122 SRR13450896 The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis [RNA-seq]
11.7 -4.5 -2.6 SRP258701 SRR11614791 Ethylene modulates the dynamics of translation via GCN2 and EIN2 in Arabidopsis under submergence
11.4 -3.9 -2.9 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
11.3 -4.1 -2.8 SRP325022 SRR14877137 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
11.1 -2.8 -4.0 SRP091641 SRR4449334 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
11.0 -3.2 -3.5 SRP126574 SRR6369550 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
10.9 -3.3 -3.3 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
10.6 -2.6 -4.0 SRP155742 SRR8699957 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
10.6 -3.5 -3.0 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
10.5 -3.4 -3.1 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
10.3 -4.0 -2.6 SRP337622 SRR15931267 Hydropriming: the plant endophyte Pseudomonas argenenensis SA190 induces drought tolerance in plants via reprograming aquaporin expression and water use efficiency
Note: Samples whose contribution is more than 10 are outputted.



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