CoexViewer

Coexpression detail for AT5G54520 and AT1G05860
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT5G54520 Transducin/WD40 repeat-like superfamily protein 835540 At5g54520 0.34 6.45 6.05 5.12 153.20 0.22 2.79 -0.31 1.04 -0.43 2.59
ath AT1G05860 INO80 complex subunit D-like protein 837096 At1g05860 0.34
Platform:

coex z = 6.0461



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 835540
(z-scored expression)		 837096
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
50.7 -8.3 -6.1 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
26.3 -4.7 -5.6 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
24.4 -5.7 -4.3 SRP325022 SRR14877135 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
21.3 -4.4 -4.8 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
20.9 -7.1 -3.0 SRP100712 SRR5285666 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
18.7 -4.1 -4.5 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
18.5 -4.3 -4.3 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
18.3 -4.2 -4.4 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
17.0 -3.5 -4.9 ERP115370 ERR3333443 Arabidopsis tissue atlas
16.0 -3.8 -4.2 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
16.0 -6.2 -2.6 SRP101274 SRR5308808 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
15.7 -3.9 -4.0 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
15.6 -4.4 -3.5 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
15.2 -4.1 -3.7 SRP155742 SRR8699976 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
15.2 -4.0 -3.8 SRP018034 SRR2079771 Time-course transcriptome of wild-type Arabidopsis leaf
15.0 -3.9 -3.8 SRP274404 SRR12356829 Exchange of molecular and cellular information: a hybrid model that integrates stem cell divisions and key regulatory interactions [w5C6]
14.7 -3.6 -4.1 SRP165731 SRR8054398 The embryonic transcriptome of Arabidopsis thaliana
14.2 -4.2 -3.4 SRP090458 SRR4295856 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
13.5 -3.5 -3.8 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
13.2 -3.3 -4.0 SRP091641 SRR4426959 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
13.0 -3.5 -3.7 SRP269252 SRR12110257 Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length
12.9 -3.4 -3.8 SRP324081 SRR14813615 ARATH-IN-OUT
12.9 -3.4 -3.8 SRP362867 SRR18254735 Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses
12.7 3.4 3.7 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
12.6 -2.9 -4.3 SRP325022 SRR14877136 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
12.5 -3.5 -3.5 SRP126872 SRR6381398 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
12.4 -2.0 -6.1 SRP285380 SRR12712240 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
12.3 3.4 3.6 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.3 -3.0 -4.1 SRP251062 SRR11206305 Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants
12.0 -3.6 -3.3 SRP014482 SRR525113 Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
12.0 3.4 3.5 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
12.0 3.4 3.5 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.9 3.7 3.3 SRP285090 SRR12697065 Differential alteration of plant functions by homologous fungal candidate effectors
11.8 -3.6 -3.3 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
11.8 -3.4 -3.5 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.5 -2.8 -4.2 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
11.4 -3.1 -3.7 SRP091641 SRR4426949 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
11.2 3.6 3.1 SRP103736 SRR5440841 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
11.1 3.4 3.3 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
11.1 -3.6 -3.1 SRP119072 SRR6113964 Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana
10.8 -3.0 -3.6 SRP258701 SRR11614791 Ethylene modulates the dynamics of translation via GCN2 and EIN2 in Arabidopsis under submergence
10.8 3.2 3.4 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
10.4 -3.1 -3.4 SRP103736 SRR5440873 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
10.3 -2.7 -3.8 ERP116123 ERR3414637 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.3 -3.3 -3.2 SRP163443 SRR8060876 RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration
10.2 -3.0 -3.4 SRP126872 SRR6381404 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
10.2 -4.0 -2.6 SRP007484 SRR309176 Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions
10.2 -3.0 -3.4 SRP048829 SRR1610321 Enhanced Salicylic Acid Biosynthesis Is Involved in Heterosis for Bacterial Defense in Arabidopsis
10.0 -3.2 -3.1 ERP021226 ERR1811891 Arabidopsis RNA-Seq Differential Gene Expression profiling
10.0 -2.8 -3.6 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
Note: Samples whose contribution is more than 10 are outputted.



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