CoexViewer

Coexpression detail for AT5G56900 and AT3G04490
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-e.c1-0
ath AT5G56900 CwfJ-like family protein / zinc finger (CCCH-type) family protein 835792 At5g56900 0.72 6.18 6.69 3.22
ath AT3G04490 exportin-4 protein 819605 At3g04490 0.72
Platform:

coex z = 6.6946



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 835792
(z-scored expression)		 819605
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
39.6 -6.0 -6.6 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
29.6 -5.4 -5.5 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
27.1 -5.5 -5.0 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
20.9 -5.1 -4.1 ERP115370 ERR3333443 Arabidopsis tissue atlas
20.1 -4.3 -4.7 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
19.8 -3.3 -6.0 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
19.2 -4.7 -4.1 SRP165731 SRR8054399 The embryonic transcriptome of Arabidopsis thaliana
19.0 -4.2 -4.5 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
18.7 -4.3 -4.3 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
17.8 -4.2 -4.2 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
17.6 -3.2 -5.4 ERP116123 ERR3414638 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
16.8 3.4 4.9 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
16.1 -3.9 -4.1 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
15.8 -4.0 -3.9 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
14.6 4.3 3.4 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
14.4 -4.2 -3.4 SRP119072 SRR6113964 Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana
14.0 -3.5 -4.0 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
13.8 -3.7 -3.7 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
13.7 3.7 3.7 SRP285090 SRR12697065 Differential alteration of plant functions by homologous fungal candidate effectors
13.4 -4.2 -3.2 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
13.4 3.4 3.9 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.3 -3.7 -3.6 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
13.1 -3.5 -3.7 ERP116123 ERR3414637 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
13.0 3.6 3.6 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
13.0 -3.6 -3.7 SRP039091 SRR1179986 Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource
12.8 -3.4 -3.7 SRP269252 SRR12110257 Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length
12.8 3.5 3.6 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
12.5 3.4 3.7 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.3 3.5 3.5 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
12.1 -3.4 -3.6 SRP093913 SRR5054306 Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis
11.7 -3.3 -3.5 SRP073724 SRR3419765 Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
11.7 -3.6 -3.2 SRP297920 SRR13253061 Transcript analysis under phosphate and iron deprivation in 7 day old Arabidopsis thaliana seedlings
11.4 3.4 3.4 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.4 3.4 3.4 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.3 -3.5 -3.3 SRP272650 SRR12272429 Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity
11.3 3.3 3.4 SRP277946 SRR12469632 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.3 3.7 3.0 SRP277946 SRR12470059 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.2 -3.6 -3.1 SRP101274 SRR5308792 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
11.2 3.3 3.4 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
10.9 -3.6 -3.1 SRP132865 SRR6726417 Molecular basis of flowering under natural long-day conditions in Arabidopsis
10.9 -3.4 -3.2 SRP150217 SRR7289585 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.9 3.0 3.7 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.8 2.9 3.7 SRP266133 SRR11934683 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
10.6 3.4 3.1 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
10.6 -4.2 -2.6 SRP017386 SRR627685 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
10.6 -3.2 -3.3 SRP091641 SRR4426949 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.6 -3.1 -3.4 SRP163443 SRR8060876 RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration
10.5 3.1 3.4 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 -3.6 -2.9 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
10.4 3.0 3.5 SRP277946 SRR12470067 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 3.4 3.1 SRP277946 SRR12470057 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 3.3 3.1 SRP095347 SRR5120250 Genetic influences on gene expression in Arabidopsis thaliana
10.3 -3.7 -2.8 SRP126872 SRR6381398 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
10.3 -3.2 -3.2 SRP150217 SRR7289570 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.3 -4.4 -2.3 SRP266133 SRR11934520 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
10.2 2.9 3.5 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.2 3.4 3.0 SRP154323 SRR7536247 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
10.2 -3.5 -2.9 ERP116123 ERR3414642 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.2 3.3 3.1 SRP277946 SRR12469846 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.2 -3.4 -3.0 ERP021226 ERR1811891 Arabidopsis RNA-Seq Differential Gene Expression profiling
10.1 -3.6 -2.8 SRP119072 SRR6113963 Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana
10.0 3.2 3.1 SRP052858 SRR1773555 Transcriptome-wide identification of Arabidopsis messenger RNAs transported between tissues
Note: Samples whose contribution is more than 10 are outputted.



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