CoexViewer

Coexpression detail for AT5G56900 and PPT1
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT5G56900 CwfJ-like family protein / zinc finger (CCCH-type) family protein 835792 At5g56900 0.72 4.94 3.98 4.56 326.30 -0.03 2.53 -1.36 2.66 2.13 3.00
ath PPT1 polyprenyltransferase 1 828466 At4g23660 0.72
Platform:

coex z = 3.9843



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 835792
(z-scored expression)		 828466
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
37.8 -6.0 -6.3 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
28.5 -5.5 -5.2 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
25.3 -5.4 -4.7 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
19.5 -4.2 -4.6 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
18.0 -4.3 -4.2 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
17.9 -3.9 -4.6 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
17.7 -4.2 -4.2 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
17.7 -4.2 -4.2 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
17.6 -4.3 -4.1 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
16.4 -4.0 -4.1 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
16.1 -4.7 -3.4 SRP165731 SRR8054399 The embryonic transcriptome of Arabidopsis thaliana
14.6 4.3 3.4 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
14.3 -4.3 -3.4 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
14.1 -3.6 -4.0 SRP039091 SRR1179986 Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource
14.0 -3.4 -4.1 SRP285380 SRR12712240 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
13.6 -3.4 -4.0 SRP090459 SRR4296043 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
13.4 -3.3 -4.1 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
13.0 -3.2 -4.1 SRP150217 SRR7289570 Widespread inter-individual gene expression variability in Arabidopsis thaliana
12.8 3.5 3.6 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
12.8 -3.7 -3.4 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
12.7 -3.7 -3.4 SRP126872 SRR6381398 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
12.4 -3.4 -3.6 SRP269252 SRR12110257 Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length
12.4 -3.0 -4.1 SRP104760 SRR5467218 Interactions between effector-triggered immunity (ETI) and pattern-triggered immunity (PTI) in an Arabidopsis dde2 ein2 pad4 sid2 mutant
12.4 3.4 3.6 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
12.1 -4.2 -2.9 SRP119072 SRR6113964 Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana
12.0 -3.5 -3.4 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
12.0 -3.0 -4.0 ERP116123 ERR3414641 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.0 3.6 3.3 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
11.8 -3.7 -3.2 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.8 3.7 3.2 SRP285090 SRR12697065 Differential alteration of plant functions by homologous fungal candidate effectors
11.7 -2.9 -4.1 SRP097877 SRR5205677 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
11.7 -3.5 -3.3 SRP102178 SRR5360867 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
11.6 -3.4 -3.4 SRP093913 SRR5054306 Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis
11.5 -2.9 -3.9 SRP065994 SRR2932456 Identification of plant vacuolar transporters mediating phosphate storage
11.3 -3.4 -3.3 SRP150217 SRR7289585 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.3 -2.8 -4.0 SRP155742 SRR8699957 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
11.3 -3.6 -3.1 SRP297920 SRR13253061 Transcript analysis under phosphate and iron deprivation in 7 day old Arabidopsis thaliana seedlings
11.2 3.4 3.3 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.2 3.4 3.3 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.0 3.1 3.5 SRP277946 SRR12470056 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.7 3.3 3.2 SRP277946 SRR12469632 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.6 -3.3 -3.2 SRP214585 SRR9681569 Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins
10.6 -3.2 -3.3 ERP116123 ERR3414638 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.6 -2.6 -4.1 SRP251062 SRR11206305 Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants
10.5 2.9 3.6 SRP266133 SRR11934683 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
10.5 -3.5 -3.0 ERP116123 ERR3414637 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.5 -3.5 -3.0 ERP116123 ERR3414642 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.5 -3.2 -3.3 SRP365415 SRR18441284 Transcriptome profiling of Arabidopsis roots upon lateral root induction in WT and TOR knock down [dataset1]
10.4 -3.3 -3.1 SRP073724 SRR3419765 Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
10.3 3.5 3.0 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
10.3 3.4 3.0 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
10.1 -3.5 -2.9 SRP272650 SRR12272429 Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity
10.0 -3.0 -3.3 SRP237340 SRR10677199 MYB30 orchestras ROS wave-triggered systemic transcriptomic responses and plant acclimation in Arabidopsis
10.0 3.1 3.2 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
Note: Samples whose contribution is more than 10 are outputted.



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