CoexViewer
Coexpression detail for TOC1 and ELF4
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | TOC1 | CCT motif -containing response regulator protein | 836259 | At5g61380 | 0.88 | 10.22 | 8.79 | 8.89 | 2.50 | 3.11 | 4.54 | 2.25 | 5.37 | 1.93 | 9.32 | |
| ath | ELF4 | EARLY FLOWERING-like protein (DUF1313) | 818596 | At2g40080 | 0.88 |
|
coex z = 8.7897 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 836259 (z-scored expression) |
818596 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 22.5 | -4.6 | -4.9 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 17.7 | -4.3 | -4.1 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 16.5 | -4.3 | -3.8 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 16.2 | -3.7 | -4.4 | SRP253504 | SRR11359560 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 15.8 | -3.8 | -4.2 | SRP238086 | SRR10733523 | mRNA sequencing from Arabidopsis mutants and transgenic plants in the Col-0 accession |
| 13.2 | -5.2 | -2.6 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 13.0 | -2.9 | -4.5 | SRP091641 | SRR4426666 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 13.0 | -2.9 | -4.5 | SRP091641 | SRR4449330 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 12.7 | -3.9 | -3.3 | SRP274404 | SRR12356829 | Exchange of molecular and cellular information: a hybrid model that integrates stem cell divisions and key regulatory interactions [w5C6] |
| 11.5 | -4.0 | -2.9 | SRP091641 | SRR4426683 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 11.5 | -3.8 | -3.0 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 11.3 | 3.8 | 3.0 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 10.8 | -3.3 | -3.2 | SRP091641 | SRR4426608 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.8 | -4.2 | -2.5 | SRP285380 | SRR12712251 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 10.6 | -4.3 | -2.5 | SRP162520 | SRR7899134 | Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0), at 10min to 12h after detachment Col-0, coi1-2 and sdg8-2 seedlings. |
| 10.5 | -2.3 | -4.5 | SRP091641 | SRR4449326 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.5 | -3.7 | -2.9 | SRP091641 | SRR4449319 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.5 | -4.5 | -2.4 | SRP132865 | SRR6726416 | Molecular basis of flowering under natural long-day conditions in Arabidopsis |
| 10.5 | -2.8 | -3.8 | SRP078926 | SRR3930594 | Arabidopsis thaliana Transcriptome or Gene expression |
| 10.4 | -2.3 | -4.5 | SRP091641 | SRR4449328 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.2 | -3.7 | -2.7 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 10.2 | -3.6 | -2.9 | SRP091641 | SRR4426673 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.2 | 3.5 | 2.9 | SRP282437 | SRR12642166 | Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids |
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