CoexViewer
Coexpression detail for PPCK1 and PFA-DSP4
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | PPCK1 | phosphoenolpyruvate carboxylase kinase 1 | 837387 | At1g08650 | 0.7 | 5.38 | 5.07 | 4.23 | 61.50 | 2.01 | 1.14 | 3.49 | 1.43 | 2.12 | 1.39 | |
| ath | PFA-DSP4 | Phosphotyrosine protein phosphatases superfamily protein | 825706 | At4g03960 | 0.7 |
|
coex z = 5.0651 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 837387 (z-scored expression) |
825706 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 27.1 | -4.3 | -6.4 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 20.1 | -4.7 | -4.3 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 18.1 | 4.0 | 4.5 | SRP277946 | SRR12469638 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 17.5 | -3.5 | -5.1 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 16.7 | -3.2 | -5.1 | SRP150217 | SRR7289570 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 16.1 | -3.7 | -4.4 | SRP150217 | SRR7289599 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 15.9 | 3.3 | 4.8 | SRP277946 | SRR12469767 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 15.8 | -3.5 | -4.5 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 14.9 | 3.4 | 4.3 | SRP277946 | SRR12469766 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.7 | -3.5 | -4.2 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 14.5 | -3.6 | -4.0 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 14.3 | -4.3 | -3.3 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 14.1 | 3.2 | 4.3 | SRP151817 | SRR7465450 | Genome-wide identification of putative translation regulator cis-Natural Antisense Transcripts in Arabidopsis thaliana |
| 12.2 | -3.5 | -3.5 | SRP136812 | SRR6919678 | The SOG1 transcriptional activator and the MYB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [RNA-seq DREMmodel] |
| 11.9 | -3.6 | -3.3 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 11.9 | -3.1 | -3.8 | SRP126872 | SRR6381398 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 11.8 | -2.7 | -4.4 | SRP150217 | SRR7289615 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 11.6 | 2.7 | 4.2 | SRP277946 | SRR12469768 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.5 | 3.1 | 3.7 | SRP151817 | SRR7465414 | Genome-wide identification of putative translation regulator cis-Natural Antisense Transcripts in Arabidopsis thaliana |
| 11.4 | 3.2 | 3.6 | SRP277946 | SRR12469769 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.2 | -3.9 | -2.9 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 11.0 | 4.0 | 2.8 | SRP090459 | SRR4295976 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI] |
| 10.9 | -3.5 | -3.1 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 10.7 | 3.3 | 3.2 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 10.7 | -2.0 | -5.3 | SRP266133 | SRR11934474 | Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions |
| 10.6 | 3.1 | 3.4 | SRP285090 | SRR12697055 | Differential alteration of plant functions by homologous fungal candidate effectors |
| 10.6 | -2.6 | -4.0 | SRP315390 | SRR14275192 | The E3 Ubiquitin Ligase AFF1 targets ARF19 to the proteasome |
| 10.5 | 2.8 | 3.7 | SRP277946 | SRR12469770 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.5 | 3.2 | 3.2 | SRP279325 | SRR12546054 | Coordination of microbe-host homeostasis via a crosstalk with plant innate immunity |
| 10.2 | -3.8 | -2.7 | SRP073485 | SRR3401791 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 10.2 | -2.5 | -4.1 | SRP126574 | SRR6369375 | Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis |
The preparation time of this page was 0.8 [sec].
