CoexViewer
Coexpression detail for AT1G09200 and AT3G27360
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | AT1G09200 | Histone superfamily protein | 837440 | At1g09200 | 0.85 | 15.25 | 12.18 | 14.19 | 9.80 | 2.30 | 4.76 | 4.29 | 4.79 | 2.66 | 6.02 | |
| ath | AT3G27360 | Histone superfamily protein | 822357 | At3g27360 | 0.85 |
|
coex z = 12.1818 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 837440 (z-scored expression) |
822357 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 37.2 | -5.7 | -6.5 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 23.1 | -5.0 | -4.6 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 17.2 | -4.7 | -3.7 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 16.0 | -4.2 | -3.8 | SRP139506 | SRR6982867 | Cell type identity determines transcriptomic immune responses in Arabidopsis thaliana roots |
| 15.5 | -3.7 | -4.2 | SRP073487 | SRR3401835 | Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant. |
| 15.4 | -3.9 | -3.9 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 14.4 | -3.6 | -4.1 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 13.6 | 4.2 | 3.2 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 13.5 | -3.1 | -4.3 | SRP150217 | SRR7289598 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 13.5 | -2.8 | -4.8 | SRP073485 | SRR3401786 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 13.4 | -2.4 | -5.6 | SRP285380 | SRR12712238 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 13.3 | -3.5 | -3.8 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 13.1 | -2.1 | -6.1 | SRP091641 | SRR4426730 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 12.8 | 3.4 | 3.7 | SRP070918 | SRR3193434 | Time course transcriptional profiles of the Arabidopsis thaliana response to flg22 infiltration for all combinatorial genotypes of the alleles dde2-2, ein2-1, pad4-1, and sid2-2. |
| 11.8 | -3.0 | -3.9 | SRP090416 | SRR4293721 | Photorespiration is crucial to the dynamic response of photosynthetic metabolism and stomatal movement to altered CO2 availability |
| 11.7 | 3.8 | 3.1 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 11.6 | -3.4 | -3.4 | SRP187156 | SRR8648403 | Genome-wide profiling of Arabidopsis thaliana Col-0 and ein2/jar1 host responses to Macrophomina phaseolina infection |
| 11.4 | -3.5 | -3.3 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 11.2 | -2.9 | -3.9 | SRP056607 | SRR1942842 | Potential role of natural variation in the Arabidopsis CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden |
| 11.1 | 3.2 | 3.5 | ERP123539 | ERR4471740 | EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes |
| 10.9 | -1.8 | -6.1 | SRP091641 | SRR4426614 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.9 | -3.6 | -3.1 | SRP071947 | SRR3234413 | Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-seq I] |
| 10.9 | -3.6 | -3.0 | SRP044776 | SRR1523938 | High-resolution tissue-specific analysis of the Arabidopsis transcriptome in response to shade |
| 10.6 | -2.3 | -4.6 | SRP267137 | SRR12005766 | ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks |
| 10.6 | -3.1 | -3.4 | SRP091641 | SRR4426442 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.4 | 3.6 | 2.9 | SRP277946 | SRR12470185 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.2 | -2.9 | -3.5 | SRP114806 | SRR5894775 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
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