CoexViewer

Coexpression detail for NRB4 and AT3G48060
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-e.c1-0
ath NRB4 mediator of RNA polymerase II transcription subunit 15a-like protein 838147 At1g15780 0.88 6.14 6.16 3.78
ath AT3G48060 BAH and TFIIS domain-containing protein 823961 At3g48060 0.88
Platform:

coex z = 6.1625



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 838147
(z-scored expression)		 823961
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
55.3 -7.5 -7.4 SRP090458 SRR4295856 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
36.8 -6.3 -5.9 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
31.9 -5.6 -5.7 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
26.0 -4.9 -5.3 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
22.3 5.0 4.5 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
21.7 4.7 4.6 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
19.9 -3.7 -5.4 SRP103817 SRR5444476 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
19.8 -4.1 -4.8 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
19.3 -4.5 -4.3 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
18.8 -4.8 -3.9 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
18.7 4.3 4.4 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
17.5 -4.3 -4.1 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
17.4 -4.9 -3.6 SRP103817 SRR5444474 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
15.8 -4.3 -3.7 SRP277946 SRR12469574 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
15.5 -4.0 -3.9 SRP093913 SRR5054306 Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis
15.4 -3.9 -4.0 SRP281951 SRR12620957 RNA-Seq experiment on Arabidopsis seedlings regarding SLIM1 and EIL1 function at low S
14.9 3.8 3.9 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
14.6 3.7 4.0 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.5 -2.9 -5.0 SRP103817 SRR5444475 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
14.5 3.8 3.8 SRP103736 SRR5440785 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
14.4 -3.6 -4.0 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
14.3 -3.8 -3.8 ERP116123 ERR3414637 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
14.2 -3.9 -3.6 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
13.9 -3.6 -3.9 SRP282437 SRR12642226 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
13.6 -3.8 -3.6 SRP220476 SRR10072739 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
13.6 3.6 3.8 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.4 3.6 3.7 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
13.3 3.5 3.8 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.3 3.7 3.6 SRP277946 SRR12470201 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.3 -3.4 -3.9 SRP063017 SRR2221848 RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes
13.2 3.4 3.9 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.1 3.5 3.7 SRP277946 SRR12469638 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.0 -3.6 -3.7 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
12.9 3.5 3.7 SRP277946 SRR12469632 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.8 -3.6 -3.5 ERP116123 ERR3414638 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.8 3.6 3.5 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
12.8 -3.8 -3.3 SRP220476 SRR10072740 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
12.7 -3.4 -3.7 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
12.6 3.1 4.0 SRP266133 SRR11934683 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
12.5 -2.9 -4.2 SRP114806 SRR5894725 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
12.5 -3.8 -3.3 SRP198083 SRR9045751 Role of cis-zeatin in root responses to phosphate starvation
12.2 3.3 3.7 SRP103736 SRR5440786 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
12.1 -3.8 -3.2 SRP119072 SRR6113964 Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana
12.0 -3.4 -3.6 SRP269252 SRR12110257 Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length
12.0 -3.8 -3.2 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
12.0 -3.4 -3.5 ERP115370 ERR3333436 Arabidopsis tissue atlas
11.9 -3.6 -3.3 SRP126872 SRR6381405 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
11.9 -3.5 -3.4 SRP251062 SRR11206305 Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants
11.9 -3.9 -3.0 SRP277946 SRR12469806 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.8 -3.6 -3.3 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.8 -3.4 -3.5 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
11.6 -3.5 -3.3 SRP073724 SRR3419765 Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
11.6 2.2 5.2 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
11.5 3.4 3.4 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.5 -3.6 -3.2 SRP126872 SRR6381404 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
11.4 -3.3 -3.5 SRP050945 SRR1696859 Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana
11.4 -3.6 -3.2 SRP150771 SRR7357980 RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling
11.3 -2.6 -4.4 SRP176451 SRR8404535 Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq]
11.2 -3.5 -3.2 ERP115370 ERR3333439 Arabidopsis tissue atlas
11.2 2.9 3.9 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
11.0 -3.9 -2.9 SRP220476 SRR10072738 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.9 -3.6 -3.1 SRP097877 SRR5205677 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
10.9 -3.4 -3.2 SRP091641 SRR4426978 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.7 3.1 3.5 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
10.6 -3.5 -3.0 SRP076846 SRR3707344 The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status (mRNA-seq)
10.6 -3.4 -3.1 SRP133652 SRR6791988 The disease resistance protein SNC1 represses the biogenesis of microRNAs and phased siRNAs [mRNA]
10.4 3.1 3.3 SRP277946 SRR12470190 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 -3.4 -3.0 SRP119072 SRR6113965 Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana
10.3 3.2 3.2 SRP277946 SRR12470067 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.3 3.2 3.2 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
10.2 -2.8 -3.7 SRP372716 SRR18963423 Interpreting gene co-regulation and metabolic profiling in the unique starch metabolism of Arabidopsis dpe2/phs1 mutant reveals insights into control mechanism of the starch granule number
10.2 -3.3 -3.1 SRP155742 SRR8699957 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
10.1 -3.5 -2.9 SRP091641 SRR4426965 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.1 3.2 3.2 SRP311610 SRR14028737 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.1 3.1 3.3 SRP311610 SRR14028738 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.1 -3.9 -2.6 SRP091641 SRR4426824 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.1 -3.2 -3.1 ERP115370 ERR3333437 Arabidopsis tissue atlas
Note: Samples whose contribution is more than 10 are outputted.



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